Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4301 ATGTTTTCATATCTCCGCCTCTGCCATAACCCTAACCTCACTTTCATAAAACCCTCTCCCATTCTCCATCTTCTTCTCCAACCCTTCTCTTCTTCCGCAAACCACTCTTTCACACTCAACTACCTCATCCAAAACCTCGCTTTCTCTCCCGAAACCGCTTCCAAAATCTCCACCAAACTTCTACTCAACAACTCACAAAACCCCGATTCAGTCCTCGCCTTATTCAAATCCCACGGCTTCTCAAATTCCCAGCTTTCCACTCTCATCAAAACCTGCCCCAATCTTCTCACCTACCATCCCAACAAAACCCTTCTCCCCAAACTCAATTTCCTTCTCCAAAAGGGTGCTTCCACTTCTGACTTAATCGACATCATCACCAAAAATCCAAGGATCTTATATCTAAGCTTGCAAAATTCCATCATCCCATTTTATGATTTAGTCAAAAGATTCTTCCTTTCTGATGAATCCACTATCGCCTCTCTCAAAGTACGCTCTTGCATGATTTATTCTAAAACCCCATCTCAGAATATTCAATTGCTGCTTCAAAATGGGGTTCCTGAGTCTAAAGTTGGTATTTTGTTTCGAAATTGGTATACTGTATTCACTCAGAACCCTCCGGTATTTGAGAAGGTAGTGATGGAACTAAAGGAATTGGGATTCAACCCCAAAACTACATTTTTCACTGTGGCATTGCGTGCTAAGATTAACAGCAAATCGAATTGGGAAAACAAGATTGATGTGTATAAGAAATGGGGTTGGTCGCAGGAAGATATTGTTTCAGCATTTTTGAAGCATCCATGGTGTATGTTGGCATCTGTGGATAAAATTGAGGCAGTGATGAAGTTTTTTGTTGATCACATTGGTTGGGAGTCTCTTGTGCTTGCCAAACATCCAATACTTATTATGATGAGTTTGGAGAAAAGGGTTATTCCTCGGGCTTTTGTATTGAAGTTTCTTGAATCCAAAGGTTTGGTTAAGGATGCTAAATTGGCTAGACCTTTCAAAGTTTCTGAGGATGTGTTTTTGAAGAAGTTTGTGAATTGCTTTGAGGAAGAAGCTTCTAATTTGTTGAAGTTGTATGAAGAGAAAAGAGAAGTTTCACGTAATGTTTGA 1113 0.3998 MFSYLRLCHNPNLTFIKPSPILHLLLQPFSSSANHSFTLNYLIQNLAFSPETASKISTKLLLNNSQNPDSVLALFKSHGFSNSQLSTLIKTCPNLLTYHPNKTLLPKLNFLLQKGASTSDLIDIITKNPRILYLSLQNSIIPFYDLVKRFFLSDESTIASLKVRSCMIYSKTPSQNIQLLLQNGVPESKVGILFRNWYTVFTQNPPVFEKVVMELKELGFNPKTTFFTVALRAKINSKSNWENKIDVYKKWGWSQEDIVSAFLKHPWCMLASVDKIEAVMKFFVDHIGWESLVLAKHPILIMMSLEKRVIPRAFVLKFLESKGLVKDAKLARPFKVSEDVFLKKFVNCFEEEASNLLKLYEEKREVSRNV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4301 370 Gene3D Transcription termination factor 3, mitochondrial 155 359 IPR038538 -
Psa1g4301 370 PANTHER CGI-12 PROTEIN-RELATED 25 366 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 Pfam mTERF 72 223 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 Pfam mTERF 174 341 IPR003690 GO:0003690|GO:0006355
Psa1g4301 370 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4301 Psa-Chr1 339522967 339524079 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g4301 mTERF 5.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4301 K15032 - gmx:102663105 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4301 1 339522967 339524079 Psa1g4301 1 339522967 339524079 ECH