Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4299 ATGGCTTCTCAAATTCTCAGATTTCCAGTATCATCAAAAAGTGCCCTAAACTCCTCATTTTCAATCCCAATAAAACCATTCTCCCTAAACTCCATTTCTTTCTCACAAAGGGTGCTTCTACTTCTGACCTTATTCAAATCGTCACCAAAAATCCAAGCCTCTATCAAAATTTACCCTTGCTTCATTTGTTCTAAAACCCCTTCTCAGAATATTCAATTCCTCCTTCAAAATGGCGTCCCGGAGTCTAAAGTTGTTACTTTTTTGTTGCAAAATCGGAATAACTTACTCACTCAAAATCCTCCGTTGTTTAAGAAGGTAGTGGTGGAATTAATGGAATTGGGATTCAACCCCAAAACAACTTTTTTCACTGTGGCATTGGGTGCTAAGATTATGAAACCCATATGGGAAACCAAGATTGGCTTGTATAAGAAATGGGGTTGGTCTGAAGAAAATATTGTCTCCGCATTTGTCATGTATCCATGGTGTATGTTGACGTCTGAGAGTAAAATCGAGGCATCAATGAGTTTTTTTGTCAATCACATGGGTTGGGATTCCCTTGTGCTTGCCAAAAATCCGATACTTCTTTCGCTGAGTCTCGAGAAAAGGGTGATTCCTAGGGCTTTTGTCTTGAAGTTTCTTGAATCTAAAGGTTTGATTAAGTATGCTAAATTGGCTGCACCTTTCAAAGTTTCTGAGGATCTGTTTTTGAAGAGATATGTGAATCGATTTAAGGAAGAATCTTCTCAGTTGTTGAAATTGTATGAAGAGAAAAAATATGTTTCAAATAAGGCTTTATGA 798 0.3734 MASQILRFPVSSKSALNSSFSIPIKPFSLNSISFSQRVLLLLTLFKSSPKIQASIKIYPCFICSKTPSQNIQFLLQNGVPESKVVTFLLQNRNNLLTQNPPLFKKVVVELMELGFNPKTTFFTVALGAKIMKPIWETKIGLYKKWGWSEENIVSAFVMYPWCMLTSESKIEASMSFFVNHMGWDSLVLAKNPILLSLSLEKRVIPRAFVLKFLESKGLIKYAKLAAPFKVSEDLFLKRYVNRFKEESSQLLKLYEEKKYVSNKAL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4299 265 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 41 259 - -
Psa1g4299 265 PANTHER CGI-12 PROTEIN-RELATED 41 259 IPR003690 GO:0003690|GO:0006355
Psa1g4299 265 SMART mt_12 86 116 IPR003690 GO:0003690|GO:0006355
Psa1g4299 265 SMART mt_12 153 184 IPR003690 GO:0003690|GO:0006355
Psa1g4299 265 SMART mt_12 185 219 IPR003690 GO:0003690|GO:0006355
Psa1g4299 265 Pfam mTERF 31 235 IPR003690 GO:0003690|GO:0006355
Psa1g4299 265 Gene3D Transcription termination factor 3, mitochondrial 24 253 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4299 Psa-Chr1 339517447 339518330 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g4299 mTERF 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4299 K15032 - gmx:102663105 217.624