Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4287 ATGGCGAAAGCTTCGAAGCAACAAGCTTCTTCCGACGAAGAATTCTCCAACTCGTCGACTTCATCGGAGGAAGAGCAAGTGAATGAACAGATCAACGAAGAAGAAGACGAAGAGGAGCTGGAAGCTGTAGCTCGTGCGGCTAGTTCCGATGATGATGAAGTTGCCGGTGATAATCCGCCGGATTCCGATGAAGATGCTGCTGCTGAAGACGCTGACGACGATGAACAGGGAGGAGATGATGATGCTCCTGAAATCAGCAAACTTGAGAAGGCTAGACTAAAAGAAATGCAGAAAATGAAGAAGCAGAAAATTCAGGAGATATTGGATACTCAGAATGCTGCCATTGAAGCTGACATGAACAATAGAGGAAAGGGACGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGCGATTCATCATCATCTCTAAAGAAGTCAAGAGGAAGTGGCCGCCATGCGTCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTGAAAGGAGAAGAAGATGGCGTTGCGAACACTCGTCTGATGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTATCAATTGGCTGGACTAAATTGGCTCATTAGATTGTATGAAAATGGAATAAATGGAATTCTGGCTGATGAGATGGGGCTCGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCATGAGTTCAGAGGAATTAAAGGTCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGGAATTGGATGAATGAGATTCGCCGCTTTTGTCCTATTCTGCGTGCTGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATCGATGAAGCTCACAGAATAAAGAACGAGAATTCATTGCTCTCTAAAACAATGAGGATTTTCAATACAAACTATCGCCTCCTCATTACTGGCACGCCACTTCAGAACAATCTCCACGAACTTTGGTCTCTGCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGGTTCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCGGATGTTGAGAAAGGGTTGCCACCAAAAAAAGAAACCATTCTTAAAGTTGGCATGTCACAGATGCAGAAACAGTATTATAAAGCATTACTGCAGAAGGATCTCGAGGTTGTCAATGCCGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACCAGTGCTGGTAAAATGGTTCTTTTGGATAAATTGCTTCCTAAATTAAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATTCTTGAAGATTATTTAATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGAGATGCCTCCATTGAGGCTTACAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGGGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTGTTCCGTTTTTGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTAATTCAACAAGGGCGGTTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAGGCAACTGCAGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCGATCAAATTTAAGATGGATGACACTGCTGAGTTATACGACTTTGATGATGATAAGGATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCACCAAGAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACCTTGCGCCAAGGTGGCCCCACTAAACCAAAGGAGCCCCGCATTCCTAGGATGCCACAGTTGCATGATTTCCAATTTTTCAACACTCAAAGACTGAGTGAGCTGTATGAAAAGGAAGTGCGTTATCTCATGCAAGCACATCAGAAGAGTCAGGTGAAGGACTCGATAGATGTTGATGAACCAGAAGAGGCAGGAAATCAATTGACTGCTGAAGAGATGGAAGAAAAGGAACATCTTCTAGAACAGGGATTTTCATCATGGAGCCGGAAAGATTTTAATACTTTCCTCAGGGCATGTGAGAAATATGGTCGAAATGATATACAAAGCATTGCTTCTGAGATGGAAGGAAAAACTGATGAGGAAGTTGAAAGATATGCCAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATAAAAAACATTGAGAGGGGAGAGGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCTATCGGAAAGAAATTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAAGTACAGTATGGACAAAATAAAGGGAAACTATATAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGTAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCACCTTTGTTTAGATTTGATTGGTTTGTTAAGTCTCGCACAACCCAAGAACTCGCAAGGAGGTGTGACACTCTTATTCGGTTGGTAGAAAAGGAAAACCAGGAATATGATGAGAGGGAAAGACAAGCTCGCAAAGAGAAGAAGCTTGCCAAGAACATGACTCCAACAAAGCGGGCTTTGGCAAGACAGACTGAGAGTCCATCTTCTACAAAGAAGCGGAAACAGTTAACTATGGACGATTATGCTAATTTGGGTAAGAGGAGAAAATAA 3213 0.4152 MAKASKQQASSDEEFSNSSTSSEEEQVNEQINEEEDEEELEAVARAASSDDDEVAGDNPPDSDEDAAAEDADDDEQGGDDDAPEISKLEKARLKEMQKMKKQKIQEILDTQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDSSSSLKKSRGSGRHASKVTEEEEDEEYLKGEEDGVANTRLMTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIFNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKSQVKDSIDVDEPEEAGNQLTAEEMEEKEHLLEQGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTDEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPTKRALARQTESPSSTKKRKQLTMDDYANLGKRRK* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4287 1070 Gene3D - 934 1037 - -
Psa1g4287 1070 Coils Coil 93 113 - -
Psa1g4287 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Psa1g4287 1070 Gene3D - 846 900 - -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 747 777 - -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 1017 1070 - -
Psa1g4287 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 410 IPR027417 -
Psa1g4287 1070 SMART sant 948 1009 IPR001005 -
Psa1g4287 1070 SMART sant 846 895 IPR001005 -
Psa1g4287 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 651 IPR001650 -
Psa1g4287 1070 Pfam SLIDE 903 1013 IPR015195 GO:0003677|GO:0005634|GO:0006338
Psa1g4287 1070 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1070 - -
Psa1g4287 1070 SUPERFAMILY Homeodomain-like 849 899 IPR009057 -
Psa1g4287 1070 ProSiteProfiles SANT domain profile. 845 897 IPR017884 -
Psa1g4287 1070 Gene3D iswi atpase 901 933 - -
Psa1g4287 1070 Pfam Helicase conserved C-terminal domain 498 610 IPR001650 -
Psa1g4287 1070 SMART ultradead3 191 383 IPR014001 -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 54 80 - -
Psa1g4287 1070 Coils Coil 17 41 - -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 1 26 - -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 142 173 - -
Psa1g4287 1070 SMART helicmild6 526 610 IPR001650 -
Psa1g4287 1070 CDD DEXHc_SMARCA1_SMARCA5 192 412 IPR044754 GO:0005524
Psa1g4287 1070 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1070 - -
Psa1g4287 1070 Pfam HAND 759 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Psa1g4287 1070 MobiDBLite consensus disorder prediction 1 89 - -
Psa1g4287 1070 Pfam SNF2-related domain 208 475 IPR000330 GO:0005524|GO:0140658
Psa1g4287 1070 Gene3D - 196 411 IPR038718 -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 1048 1070 - -
Psa1g4287 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 693 IPR027417 -
Psa1g4287 1070 SUPERFAMILY Homeodomain-like 901 1023 IPR009057 -
Psa1g4287 1070 CDD SANT 849 893 IPR001005 -
Psa1g4287 1070 CDD SF2_C_SNF 496 621 - -
Psa1g4287 1070 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 758 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Psa1g4287 1070 MobiDBLite consensus disorder prediction 1017 1034 - -
Psa1g4287 1070 MobiDBLite consensus disorder prediction 27 41 - -
Psa1g4287 1070 Coils Coil 1003 1034 - -
Psa1g4287 1070 Gene3D ISWI, HAND domain 747 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Psa1g4287 1070 Gene3D - 416 708 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4287 Psa-Chr1 339134795 339143687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4287 216 637 RAD5 or RAD16-like Gene Family AT1G02670 26.931 4.63e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa1g4287 SNF2_N 3.4e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4287 K11654 - gmx:100809750 1900.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4287 1 339134795 339143687 Psa1g4287 1 339134795 339143687 ECH
Psa4g0677 4 42783193 42792520 Psa1g4287 1 339134795 339143687 PCT