Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4285 ATGGAAGGCTCTGTTGTTGAACGTCTCGATTTCGGGAAGATGGGATATGGGTGCAAGCATTACAGGAGAAGATGCAGGATTCGTGCTCCTTGTTGCAATGAAGTTTACTCATGCCGTCATTGTCATAACGAAGCAACGAGCACGTTGAAAAACCCTATTGATCGCCACGAACTCGTTCGTCAGGATGTTGAACAAGTTGTTTGTACGGTTTGTGACACAGAACAACCAGTTGCTCAAGATTGCACTAACTGTGGTATTAGAATGGGGGAATATTTCTGCAATATCTGCAGATTCTTTGATGATGATACGGGGAAACAACAGTTTCATTGTGATGATTGTGGCATCTGCAGAGTTGGCGGGAGTGAGAATTATTTCCATTGCCAGAAGTGCGGGTCTTGCTATTCAATTGCTCTGCGTGATAATCATTTATGCGTGGAGAACTCCATGAGGCATCATTGTCCAATTTGTTACGAGTACCTTTTTGACTCGTTGAAAGACACTACTGTTATGAAATGTGGTCACACAATGCATTGTGAATGTTATCATGAGATGATAACGCGCGACAAGTACTGTTGTCCTATATGTTCCAAGTCGGTGATTGATATGTCTACAGTATGGAAGAGATTCGACGAAGAGATCGAAGCAACCACCATGCCTGAAGATTATCGGAATCGAAAGGTTTGGATACTTTGTAATGACTGCAACGATACAACTGAAGTTTTCTTCCACATTATTGGGCATAAATGCGGTCACTGCAGTTCATATAATACTCGCAATATTGCTCCTCCTGTTCTTCCGCAATAG 804 0.4241 MEGSVVERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSTLKNPIDRHELVRQDVEQVVCTVCDTEQPVAQDCTNCGIRMGEYFCNICRFFDDDTGKQQFHCDDCGICRVGGSENYFHCQKCGSCYSIALRDNHLCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMITRDKYCCPICSKSVIDMSTVWKRFDEEIEATTMPEDYRNRKVWILCNDCNDTTEVFFHIIGHKCGHCSSYNTRNIAPPVLPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4285 267 SMART ring_2 153 195 IPR001841 -
Psa1g4285 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Psa1g4285 267 SUPERFAMILY RING/U-box 152 203 - -
Psa1g4285 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Psa1g4285 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Psa1g4285 267 Gene3D - 228 262 - -
Psa1g4285 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Psa1g4285 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Psa1g4285 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Psa1g4285 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Psa1g4285 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Psa1g4285 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Psa1g4285 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Psa1g4285 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 227 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4285 Psa-Chr1 339003448 339006712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4285 10 266 C2H2 Transcription Factor Family AT3G18290 39.695 2.68e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4285 K10144 - gmx:100812246 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4285 1 339003448 339006712 Psa1g4285 1 339003448 339006712 ECH