Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4280 ATGGCTAGAGAGATTCTGATTCTGCGTCGTTTGGATCATCCCAATGTTGTTAAACTTGAAGGCTTGGTGACTTCAAGAATGTCGTGTAGTTTGTATCTTGTGTTTGAATACATGGCTCATGATTTAGCTGGGCTCGCTACAAACCCTGCAATTAAGTTCACAGAGCCTCAGGTAAAATGCTACATGCATCAACTATTTTCTGGGCTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGTTCGAACCTTCTTATTGACAACGATGGAATTCTCAAGATTGCTGATTTTGGACTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCGATGACAAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAGCTTCTTCTTGGAGCCACCGAGTATGGTGTAGGAGTGGACCTTTGGAGTGCTGGCTGCATTCTTGCAGAATTGTTGGCTGGAAAACCTATCATGCCTGGTCGAACCGAGGTGGAGCAACTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAATCAAAGCTTCCACATGCTACCATTTTTAAGCCACAACAATCATACAAGCGATGCATAGTGGAGACTTTTAAGAATTTTCCACCATCATCCCTGCCACTGATCGAGACCCTTCTCGCAATTGATCCAGATGAACGTCTGACTGCCACTGCTGCATTGCATAGTGAATTCTTTATTACAAAGCCTTATGCTTGTGATCCCTCTAGTCTTCCTAAATATCCTCCTAGCAAGGAGATGGATGCGAAACTACGCGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGATCGAATGCTGACGGTGTCAAGAAATCCCGCCCACGTGAGCGGGTAGCGAGGGGCCTTCCCGTTCCAGACGCCAATGCTGAGCTGCAAGCAAACATCGATAGACGGCGATTGATCACGCACGCAAACGCCAAGAGCAAGAGTGAAAAATTTCCACCTCCACACCAAGACGGAGCTCTTGGCTATCCTCTCGGCTCTTCCCAACACATGGATCCCATGTTCGATCCACCGGACGTACCATTCAGTTCCACAAACTTGTCACTACCCAAAACAAATATCCATACATGGTCCGGTCCACTGGTAGAACCCGGCAGCGTCAGTGCACCGAGGAGAAAGAAGAAACATGGCAGGTGA 1188 0.4655 MAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKNFPPSSLPLIETLLAIDPDERLTATAALHSEFFITKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVARGLPVPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPMFDPPDVPFSSTNLSLPKTNIHTWSGPLVEPGSVSAPRRKKKHGR* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4280 395 MobiDBLite consensus disorder prediction 275 312 - -
Psa1g4280 395 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4280 395 SUPERFAMILY Protein kinase-like (PK-like) 2 247 IPR011009 -
Psa1g4280 395 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Psa1g4280 395 MobiDBLite consensus disorder prediction 344 395 - -
Psa1g4280 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Psa1g4280 395 Gene3D Transferase(Phosphotransferase) domain 1 40 280 - -
Psa1g4280 395 PANTHER CYCLIN-DEPENDENT KINASE 1 394 - -
Psa1g4280 395 MobiDBLite consensus disorder prediction 358 372 - -
Psa1g4280 395 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4280 395 PANTHER CELL DIVISION PROTEIN KINASE 1 394 - -
Psa1g4280 395 MobiDBLite consensus disorder prediction 275 296 - -
Psa1g4280 395 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4280 Psa-Chr1 338809227 338812063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4280 3 279 Core Cell Cycle Gene Families AT5G10270 51.712 5.50e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa1g4280 Pkinase 7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4280 K08819 - gmx:100779413 739.954