Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4277 ATGGCTATAATCAGGAACATAATAGAAGACATGAGATCGAGATCTCAAAGGGTAGTTGTTGTAGTGGAGAAGGAAGTGGTGGTTGGCGACGGTTTAAGACAGAGTTGCTGGGCCAACATGCCACAAGAGCTTCTCCGTGAAGTTCTCCTTCGAATTGAAGCGTCCGAGGACACGTGGCCGCCGAGGAAGAACGTTGTCGCATGTGCCGGAGTTTGTCGAAATTGGAGAGTCATCACCAAAGAAATCGTTAAAAAACCTGAACTTTCTGCTAAGATAACTTTCCCCATTTCTGTTAAACAGCCCGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACATATTATTTGTTTCTCAGTTTAACTAGTTCGTTAGGTGATGACGGGAAGTTCCTTCTGGCTGCTCGCAAAAGTAGACGTCCTACCTGCACGGATTATATCATCTCTCTAGACGCCGATGATATGTCAAGGGGAAGCAATACCTATGTTGGGAAACTGAGATCAAATTTCCTCGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCATACAGGAGCTAAGTTTACTAAAAGTCGTTCTACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACCGGCAACTATCCCGTGGCTCACATCTCGTATGAATTGAACGTCCTTGGCTCGAGGGGGCCTAGGAGAATGCACTGTGTCATGGATTCCATACCATCCTCTTCGATCGAACCAGGAGGAGTAGCTCCTACACAAACCGAGTTTTCTCTAAACAACATAGAAATGTTTCCCATGTTTCCTTTTTTCCGATCAAAATCAAATCGTGTGATGGAGAATTCTCTCTCCGGACCCCTAGTCGGTGATCAAAAAGACGGTTTACTTGTGTTGAAAAACAAGGCTCCGAGGTGGCACGAGCAGCTACAGTGTTGGTGCTTAAACTTTCACGGACGGGTGACAGTTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAGAACGGAACTGCTGGACCCGAACACGATAAGATTATTCTGCAATTCGGAAAAGTTGGGAAGGATTTATTTACAATGGATTACCGATACCCTATCTCGGCATTTCAGGCATTCGCAATCTGCCTCAGCAGCTTCGATACCAAGATTGCTTGTGAATAA 1176 0.4575 MAIIRNIIEDMRSRSQRVVVVVEKEVVVGDGLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRNWRVITKEIVKKPELSAKITFPISVKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKSRRPTCTDYIISLDADDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHTGAKFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPMFPFFRSKSNRVMENSLSGPLVGDQKDGLLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4277 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
Psa1g4277 391 Gene3D Tubby Protein; Chain A 94 391 IPR025659 -
Psa1g4277 391 PANTHER TUBBY-RELATED 4 391 - -
Psa1g4277 391 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 391 - -
Psa1g4277 391 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Psa1g4277 391 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Psa1g4277 391 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Psa1g4277 391 PRINTS Tubby superfamily signature 303 320 IPR000007 -
Psa1g4277 391 PRINTS Tubby superfamily signature 321 337 IPR000007 -
Psa1g4277 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Psa1g4277 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Psa1g4277 391 Pfam Tub family 98 386 IPR000007 -
Psa1g4277 391 ProSitePatterns Tub family signature 1. 321 334 IPR018066 -
Psa1g4277 391 SUPERFAMILY Tubby C-terminal domain-like 86 391 IPR025659 -
Psa1g4277 391 Pfam F-box domain 37 86 IPR001810 GO:0005515
Psa1g4277 391 SUPERFAMILY F-box domain 31 80 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4277 Psa-Chr1 338719807 338723366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4277 12 391 TUB Transcription Factor Family AT2G47900 73.822 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa1g4277 Tub 3.8e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4277 K19600 - gmx:100778346 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4277 1 338719807 338723366 Psa1g4277 1 338719807 338723366 ECH