Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4273 ATGAACCAGTATCACATCTACGAAGCCATTGGTCGTGGCAGATACTCCACAGTGTATAAAGGTAGAAAGAAGAAGACGATCGAGTATTTCGCCATCAAAAGCGTTGATAAATCTCAGAAAAACAAGGTTCTTCAAGAAGTTAGGATTCTTCACACTTTGGATCACCGAAATGTGCTCAGGTTTTATTCATGGTATGAAACTTCTGCTCACTTATGGTTGGTCTTGGAGTATTGTGTGGGTGGGGATCTACTCTCTATATTACGGCAGGATATTCAGCTTCCTGAGGATTCTGTTAATGAGCTTGCTTGTGACCTCGTCAGAGCTCTGCAGTATTTACATTCAAATGGAATTATTTATTGTGATTTGAAACCATCAAATATTCTACTAGATGAAAATGGACGTACAAAGCTCTGTGATTTCGGATTGGCAAGAAAGTTAAAAGAGATATCGAAAGTTCCTTCTTCTTCGTTGCCTCCAGCAAAACGTGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAAGATGGCGGAGTTCATTCTTATGCTTCTGATTTCTGGGCTCTCGGTTGTGTACTATATGAATGTTATGCTGGGAGGCCTCCTTTTGTGGGAAGAGAATTCACTCACCTTGTAAAATCCATCATTTCAGACCCGACTCCACCTCTCCCAGGAAATCCAAGTCGACCTTTTGTCAATTTAATTAATTCTCTGTTGGTCAAAGATCCAGCCGAAAGAATACAGTGGCCTGAGCTTTGTGGTCATGCCTTTTGGAAAACCAAATTCTCTCTAGTGTCTCTTCCTTCTCAACCTGCATTTGATGATATGATAGAGCTTCATGCTAAACCATGCTTATCAGAACGTAATGGAGATAAGTCTTCTCATAACAGAACCCCTCCCAAATATCGTGAAAAAGACATGAAGGGAGTGCTAAAAAAGGATGAAAATTCTGGATTAAGAGGCATTGAGACACCAACAAGGGCAACACCAAATAGTCACAGAACTCAGACAAAGGGTTCTGGCCGAACAATTGAGGTCAAGCAGAAAGATTCTTCCAATATTAAAAAAGGTTTGAATCTTTTGAGACTTTCAAGAATAGCAAAATCAAATTTACAAAAAGAAAATGAGAAAGAAAACTATCGTCGCCCCTTGCCCAATAGCTCTGAGAAGGATGCAGATGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATAGTGAAGAGGATACACTTGAAGAAACTGATGGTTCTGAACACACACCCGTGCCCAATGAGAAAATGGCGAATAATTTTCATAATCAAGGAAAAGCAGATGACACTGAAAATGTTATACACCAGTTGGACACCTTATCTGTGACTACTCCTGCCTCAGAAGATTCAAGGTCATTCGATCACGAGTCAACTCCTGACCGTTCTGACATATCTGCTATTTCTCCAAGTGTAAGCCCTCTAGTGAAAAAACATAGGCCAAAAGAAGATTTAGGTTCTGTCCTTGACTCTGATTCTGCGAGATCATCAAATGACAATTCCCAGGTTATTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAGTTGACAAAGGCTCGGAAGTCATCCCTTCACTTCCTTTTGAGGCGTTACAAGCACCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTACATAACCGAATTGCATCCATCTTGAATGGGAATACTAGCATTGGAGAAAAACAAAATGTGGTCAGGTACCTCGAGATGTTGAGCAGTAATGCTGATGCAGCAAATATCTTGACCAATGGGCCAATAATGCTCATTCTCGTAAAATTGCTACGTCAGTCTAAGGCATCAGCTTTACGTGTTCAACTTGCTTCACTGATTGGTCTGTTGATCAGACACTCTACCTTTGTTGATGATAGTTTGGCTAATTCTGGAATTCTAGGTTCATTGACGGATGGCCTTAGGGACAGACAGGAAAAAGTGAGAAGGTTTTCTATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACCCAAAGTGCAGACTCTAAAGATAACACTCCGCTTGAATCTCCATCAAAGGACAATAGGACTGCACATGGCTGGCAGGTTCCAAATTCATTAATTTCCCTTGTGACATCGATATTGAGAAAAGGTGAGGATGATATAACTCAATTGTATGCATTGAGAACAGTTGAGAATATTTGCAGTCAAGGAGGTGTCTGGGTGGGACGTTTGACCAGTCAAGATGTTATTAATAATCTCTGCTACATCTATAGAGCGGCAGGGAAACAGGAAAGCATGAGGCTTACTGCTGGGTCATGTTTAGTGCGCTTAGTTCGTTTTAATCCTCCTAGCATTCAGTCTGTTATAGAGAAACTCTCATTCAAGGACCTAGCTTCTGCTCTTGTCAAAGGCAGCCCACGAGAGCAGCAAATTAGCTTAAATCTTCTTAACTCAGCAATGCTTGGAAGTCATATGCTCACAAATGTTGGAAGATACCTTATACAACTTTCAGAGGATAAGAATCTGATCCCAAGTCTTCTGTCCCTTGTTGAGCAGGGTAGTGAAGTCTTAAAAGGAAAGGCACTTGTCTTTGTGGCTCTCCTCTGCAAGCACGGTAGAAGGTGGCTTCCACAGTTCTTTTGTAGCCATAAGTTACTCTCGGTGGTGGATAGGCTGGGAAAAGAGAAGGATGCCTTTGTGAGGCAGTGTTTAGTTGCATTTCTGCATATTGTGGCATCTACTATTCCAGGTTTACTGGATATGATAACAGGGGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTTCCCTTACCGGCAGATCTGCTCCAAAAGCCAATATTAATTTGTTTCCTGTTGTTCTTCATCTTCTTGAAAGTTCAGCTTTTAAGCACAAAGTGGCGACACTTCCAGTACTACGGCAGTTGGCGAATCTCATTAAACTCGCAGAGGCACCGTTTCAGGGAAGAGATGATTTCCAAATAACCCTTCTACGAATTTTAGAGTCTCTGACGGAGGAATCTTCTGTGATCCTTGGTAATCCTGACATTTTCATTCGTGAAATCCTCCCTAGTTTGACTGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGATTTTTGTGCCTTAAAATCTTTTTTGATGTGATGATTATTCTCTTGAGTGAACCAATTGAAGAAGAACAAAGATTGAATGATCTGAAGTTTGTATCAAATACACATTTTCTTCCTCTCTACCCAACCTTGATCGAAGACGAAGATCCGATTCCTATCTTTGCACAGAAACTTCTCGTCATGTTATTAGAGTTCAGTTTTATTTCAATTCCAGACATTCTACACCTGAAGACAATATCACAATGTTTTGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAACATTAAGCTGTGTCTTGCTCTGGCTTCTGCTCCGGAAATGGAGTCAAAGTTACTCTCCCAATTGAAAGTTGTTAGGAGGATTGGTAATTTTCTTGAGTTTGTATGTGCAAAGGGTATGGAAGATTTGCTGGAACCAACTCTTGGGCTGTGTAGAGCTTTTCTAGCACGTTCAGTCTTCGGACACACAACAGAACCAACTCTCTTAGGCGACTGTCCTCCTGAGGTGAGTGGAGTGGTTGACCCCCAGCAATGCGTAAGAGATATAACAGATTTCGGAAGCAATGTTGGTGTCTTCCTAGAGTTGAGTGCATCTAGGGAAACCAGTATTGCCGATATAGCTTCCGAGTGTGTGATTTTACTGCTCAAGGCTGCTCCTAGAGAAGCCACAACTGGTCTACTAACCAATCTCCCCAAGGTCACCGTGATCCTAGAATCCTGGAGTAAAGGCATCCCTCACTTAACGGTTCAGAGAATGCTTCATGCTTTAGGTTATGCTTGCAAGCAGTACTTATTGCATGCAATGATCCTATCAATATCGATACCAGAGATTTCAAGAATTGAAGGAATAGTTTCTGAACTCAAGAGTTCAAGTGTCCCTGCTTTAGCCAAAACTGCTGGATTGGCAGCCTCGGAGTTGCAGCGGTTACCTCGCTGCATTTGA 4086 0.4175 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKNKVLQEVRILHTLDHRNVLRFYSWYETSAHLWLVLEYCVGGDLLSILRQDIQLPEDSVNELACDLVRALQYLHSNGIIYCDLKPSNILLDENGRTKLCDFGLARKLKEISKVPSSSLPPAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTHLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWKTKFSLVSLPSQPAFDDMIELHAKPCLSERNGDKSSHNRTPPKYREKDMKGVLKKDENSGLRGIETPTRATPNSHRTQTKGSGRTIEVKQKDSSNIKKGLNLLRLSRIAKSNLQKENEKENYRRPLPNSSEKDADVKIENTDMELDFNENSEEDTLEETDGSEHTPVPNEKMANNFHNQGKADDTENVIHQLDTLSVTTPASEDSRSFDHESTPDRSDISAISPSVSPLVKKHRPKEDLGSVLDSDSARSSNDNSQVIWHPSDLSVRPVMPSRKVDKGSEVIPSLPFEALQAPDFVKMPKEQLEAVHNRIASILNGNTSIGEKQNVVRYLEMLSSNADAANILTNGPIMLILVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDRQEKVRRFSMAALGELLFYISTQSADSKDNTPLESPSKDNRTAHGWQVPNSLISLVTSILRKGEDDITQLYALRTVENICSQGGVWVGRLTSQDVINNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASALVKGSPREQQISLNLLNSAMLGSHMLTNVGRYLIQLSEDKNLIPSLLSLVEQGSEVLKGKALVFVALLCKHGRRWLPQFFCSHKLLSVVDRLGKEKDAFVRQCLVAFLHIVASTIPGLLDMITGDIQQMMGGRRHGHISSLTGRSAPKANINLFPVVLHLLESSAFKHKVATLPVLRQLANLIKLAEAPFQGRDDFQITLLRILESLTEESSVILGNPDIFIREILPSLTVLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLNDLKFVSNTHFLPLYPTLIEDEDPIPIFAQKLLVMLLEFSFISIPDILHLKTISQCFEFLLGDLSNANVNNIKLCLALASAPEMESKLLSQLKVVRRIGNFLEFVCAKGMEDLLEPTLGLCRAFLARSVFGHTTEPTLLGDCPPEVSGVVDPQQCVRDITDFGSNVGVFLELSASRETSIADIASECVILLLKAAPREATTGLLTNLPKVTVILESWSKGIPHLTVQRMLHALGYACKQYLLHAMILSISIPEISRIEGIVSELKSSSVPALAKTAGLAASELQRLPRCI* 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4273 1361 CDD STKc_ULK4 3 257 - -
Psa1g4273 1361 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa1g4273 1361 MobiDBLite consensus disorder prediction 283 319 - -
Psa1g4273 1361 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Psa1g4273 1361 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4273 1361 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1358 IPR044591 GO:0000911|GO:0000914|GO:0008017
Psa1g4273 1361 MobiDBLite consensus disorder prediction 371 401 - -
Psa1g4273 1361 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4273 1361 MobiDBLite consensus disorder prediction 453 515 - -
Psa1g4273 1361 MobiDBLite consensus disorder prediction 321 341 - -
Psa1g4273 1361 MobiDBLite consensus disorder prediction 402 416 - -
Psa1g4273 1361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Psa1g4273 1361 MobiDBLite consensus disorder prediction 501 515 - -
Psa1g4273 1361 MobiDBLite consensus disorder prediction 283 350 - -
Psa1g4273 1361 SUPERFAMILY Protein kinase-like (PK-like) 1 258 IPR011009 -
Psa1g4273 1361 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4273 1361 SUPERFAMILY ARM repeat 566 917 IPR016024 -
Psa1g4273 1361 MobiDBLite consensus disorder prediction 371 425 - -
Psa1g4273 1361 Gene3D - 554 917 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4273 Psa-Chr1 338576925 338583653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4273 1 246 AGC Kinase Gene Family AT1G45160 34.520 8.28e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Psa1g4273 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4273 K17545 - gmx:100777288 2355.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4273 1 338576925 338583653 Psa1g4273 1 338576925 338583653 ECH