Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4271 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGATATTGCTGAAAAGAAAATGGAAAGCAAAGATTTCATAGGGGCTCGTACAATTATCACTAAGGCTCAGAAACTATATCCCAATCTGGAGAATATCACTCAAATGCTTGTTGTTTGTGATGTGCATTGCTCTGCTGAGCAAAAATTACTGGGTACTACAAATGTGGTGGACTGGTATAAAGTTTTACAAATTGATCGCAATGATAATGATGCAATAATTAAGAAGCAGTACAAGAAGTTTGCTCTTCAACTCCATCCCGACAAAAACAAGTTTGCTGGTGCAGAATCTGCATTTAAGCTGATTGGAGAAGCTCAAAGAGTTCTTTTGGATAGAGAAAAACGAGCATTACTTAACATGACCTTAAGCAAGTTTTCAATGAGCAGAACTGCCATGCCATCTCATCAACGGAGTGTTCCTGTGAATTTTAATCCTGTGATGCAAACTAATTTCCGGCCCATTTACACAAACCTAAATCCTCAGCAGCCGCCACCGCCGCAGCCACAGCCGCCACCACCACAGCCGCCTAAGCAGCCAACTCAGCAGTCTAAGCAGCCAACTCAGCAGGGGCTTAATGGTGGTGTCCAGCCTACTTTTTGGACTATGTGCTCATTTTGTTCAGTGAAGTTTGAGTATTACAGGGTAGTTTTAAATAGATCTCTTCGCTGTCAACATTGCAGTAAGCCCTTCGTTGCATATGAGGTGGGTGCACAGGGTACCAAACCGGCAACTAATTCAAGTCATAAAGCTTTTGGCCATCAGAACAATACTCCGCATCCTGGTACTTTTAAGGTTGACGTTGGATCTCAAGGTGGTCTGCATGCTCAGAGGTCCAATAAGGAATCTCATCATAAGAAAGACTCTACTTCAAATGTCTCTGTAAAGCCAAATGGAAAGAGAAAGAGAAAGCATGTAGTACATTCCAGTGAAAGTTCTGAGTCTATAGGCAGCACTGATTCTGAATCTGAAGATGATACATTTTTTAGCAACGGTTTTCCTGGTGTTTCGACTTCTAGAGAAGAGCGTCCACGTAGATCTACACGGCAAAAGCACCAGGTTTCCTACAACGAGAATATAAGTGACGATGAAGGTGAGTTGGAACCTTCAAAACAGGGTAAGGAAAGTGCTTCACCGTGTAGTGATCGTGAAAATAATGAGGAAACTAAAACGGATGATCAGAATGGTTTGGCTGCTGGTCTGAAAGATGATTTGAAAGGGGTTAAGCAGCAAAAGCAAAAAAATTATTCTGAAGAGAGCTTAAAAGATATAGATGTGAAAATTAAGGAGGTGGGGGGAAAAGAAACAGCGGGCAGCTCAAAGATAGATGAAGTTTCAGAGCATTCAGACTCCAAATCATCAAATCACTCGGATGGTTTTGTTTATCCTGATCCAGAGTTCAGTGACTTTGACAAAGACAAGAAAGAGGGATGTTTCACTCCCGGGCAGATTTGGGCTGTTTATGATGATACAGATGGCATGCCTAGATTCTACGCTCTAATCAAAAAAGTTTTTTCTCCTGGATTCAAGATGCAGATAACTTGGCTCGAGGCAGATCCTGATGGCGAAGATGAACACAAGTGGATCGAGGAGAACCTGCCAAGTGCCTGTGGTAAATATAAACTTGGTAAGACTGTAACCATTAAAGATCAACCGATGTTCTCTCATCTGACTTTATGGGAAAGGATTAGCCGCACTACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCTCTTTTTAAGAATTGGGATATTAAATGGTATACGGATGCTGAATCTCATCAGAAGTATGATTTGGAATATGTTGAGATCTTGTCGGATTATGTTGAAGGCGTGGGAGTAATTGTTGCATACTTGGCCAAGTTGAAAGGTTATGTGAGCCTCTTCTCTCGAATTACGAATGGAGGTAACCAACCATTTCAAATGTCACCAGCTGAGTTGTTCAGATTCTCTCATAGGATTCCATCTTTTAAAATGACTGGTCAGGAAAGAGCAGGCGTGCCTGAAGGATCTTATGAACTCGATCCTATATCCTTGCCGATAGAAGAGATTGGCACTCCTGATGATTTAGAAGTGAACGTTGCATCTTCTGCCAAGGTGAATTTGGAAAGAAGCAATTCAGTAGAGAAGAAGAAGGATCTTGTTGATCATATAGATGATGTTGGTGCTCCATCAGCTTCGGTTCAAGATTCTTTTGAAGTTCCAGACCCTTCGTTCTACCAATTTGATGCTGAGAGGTCTCATGAAAAGTTTGAGGCTGGCCAGATTTGGGCATTTTATGGTGACGAAGATGAACTTCCAAAATACTACGGCCAGATTAAAGGGGTTAGGAGGATTGGCCCAAAAATTGAGTTGGAAGTATTTTATCTTACTGATTGCCGGCTACCTAAGAAAGTTATTAGATGGGATGATAAAGATATGATCATTTCCTGTGGAAGATTTAAAATCAAGCCAAGTGCCAAGATATGCACTTACAGCAACACCAATTCTGTTTCACATCTGGTGCATGCTAGTTCTGTTGAAAAGAACAAAGAATATGAAATTTTTCCGCGGAAGGGTGAAATTTGGGCACTGTATAGGGACTGGACGACTAAAATCAAACGTTCTGATTTGAAAAACTGGGAGTACGACATAGTGGAAATCATTGAAGACGGTGATATGTGGACAGACATTTTGTTTCTGGAGAAGGTAAATGGTTACAGTTCAGTTTTTAAGGGCAAATTAAATAGCGGAGGATCAACGATGACCATGACGATCTCAATGAATGAGCTGCTCAAATTCTCCCACAAGATACCTGCTTTCAAACTTACAGAAGAACATGACAACAATCTGAGAGGCTTCTGGGAACTTGATCCAGGAGCAATACCACAACATTATCTTAGCAAGGAGTAA 2925 0.4123 MDCNKEEALRAKDIAEKKMESKDFIGARTIITKAQKLYPNLENITQMLVVCDVHCSAEQKLLGTTNVVDWYKVLQIDRNDNDAIIKKQYKKFALQLHPDKNKFAGAESAFKLIGEAQRVLLDREKRALLNMTLSKFSMSRTAMPSHQRSVPVNFNPVMQTNFRPIYTNLNPQQPPPPQPQPPPPQPPKQPTQQSKQPTQQGLNGGVQPTFWTMCSFCSVKFEYYRVVLNRSLRCQHCSKPFVAYEVGAQGTKPATNSSHKAFGHQNNTPHPGTFKVDVGSQGGLHAQRSNKESHHKKDSTSNVSVKPNGKRKRKHVVHSSESSESIGSTDSESEDDTFFSNGFPGVSTSREERPRRSTRQKHQVSYNENISDDEGELEPSKQGKESASPCSDRENNEETKTDDQNGLAAGLKDDLKGVKQQKQKNYSEESLKDIDVKIKEVGGKETAGSSKIDEVSEHSDSKSSNHSDGFVYPDPEFSDFDKDKKEGCFTPGQIWAVYDDTDGMPRFYALIKKVFSPGFKMQITWLEADPDGEDEHKWIEENLPSACGKYKLGKTVTIKDQPMFSHLTLWERISRTTFKVYPRKGETWALFKNWDIKWYTDAESHQKYDLEYVEILSDYVEGVGVIVAYLAKLKGYVSLFSRITNGGNQPFQMSPAELFRFSHRIPSFKMTGQERAGVPEGSYELDPISLPIEEIGTPDDLEVNVASSAKVNLERSNSVEKKKDLVDHIDDVGAPSASVQDSFEVPDPSFYQFDAERSHEKFEAGQIWAFYGDEDELPKYYGQIKGVRRIGPKIELEVFYLTDCRLPKKVIRWDDKDMIISCGRFKIKPSAKICTYSNTNSVSHLVHASSVEKNKEYEIFPRKGEIWALYRDWTTKIKRSDLKNWEYDIVEIIEDGDMWTDILFLEKVNGYSSVFKGKLNSGGSTMTMTISMNELLKFSHKIPAFKLTEEHDNNLRGFWELDPGAIPQHYLSKE* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4271 974 Pfam DnaJ domain 69 127 IPR001623 -
Psa1g4271 974 MobiDBLite consensus disorder prediction 443 472 - -
Psa1g4271 974 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 972 - -
Psa1g4271 974 MobiDBLite consensus disorder prediction 321 347 - -
Psa1g4271 974 SUPERFAMILY Chaperone J-domain 65 136 IPR036869 -
Psa1g4271 974 MobiDBLite consensus disorder prediction 349 401 - -
Psa1g4271 974 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Psa1g4271 974 SMART dnaj_3 68 125 IPR001623 -
Psa1g4271 974 MobiDBLite consensus disorder prediction 172 191 - -
Psa1g4271 974 Pfam Domain of unknown function (DUF3444) 741 950 IPR024593 -
Psa1g4271 974 Pfam Domain of unknown function (DUF3444) 470 674 IPR024593 -
Psa1g4271 974 Gene3D DnaJ domain 67 172 IPR036869 -
Psa1g4271 974 MobiDBLite consensus disorder prediction 284 427 - -
Psa1g4271 974 MobiDBLite consensus disorder prediction 172 201 - -
Psa1g4271 974 PANTHER - 1 972 - -
Psa1g4271 974 MobiDBLite consensus disorder prediction 443 464 - -
Psa1g4271 974 PRINTS DnaJ domain signature 71 89 IPR001623 -
Psa1g4271 974 PRINTS DnaJ domain signature 89 104 IPR001623 -
Psa1g4271 974 PRINTS DnaJ domain signature 105 125 IPR001623 -
Psa1g4271 974 CDD DnaJ 69 122 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4271 Psa-Chr1 338500622 338504813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4271 15 246 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 28.390 1.76e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4271 - - cam:101500991 1368.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4271 1 338500622 338504813 Psa1g4271 1 338500622 338504813 ECH
Psa4g0688 4 43657649 43662195 Psa1g4271 1 338500622 338504813 PCT