Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4266 ATGCAAGATCAACAACCATTACCAACTCATGAACCTCCCATGATTTCCCATCAGACCGAAACCGGGCTAAACAAAGAAGTTGCATATAGTGGAGCCGGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGTAGCAGTAGCACGCGTGGGCGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATATCATCACCGAAAGATTTTTTGCGAGCTTTGAGCTTCAAAAAAAAAGAAAATGTAGTAGATGGTGAATCAAGCAGTCTCCTTAATTCAGACCCTAAGACAGCTGCAGACAGTACTAGAATGGCCTCCATATCGGAAATTTCATGGTCAAGATGTACTTCTCTTCCTGTTACACATGCGCCTAATCTGTCCCCTATAGTTGCTACGCCTGTGTCTGCGAGGACATATAATGAACAACGGATTAAGCCACATAAAGATGTTAAATCTAAGGTTTCAAGGTCCCTTACAATACCTGCACGAAATGTTGTGATTGTTAGATCTGTCTCTTTTGTCACCCGCAATGAACAAGAACAACAAGATACAAGTGACGATCAAATAACTCCTGCGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCCGAAGAGGAAGCAGTGTGCAGGATATGTCTTGACACGTGCGATGAAGGAAACACCTTTAAAATGGAATGCAGTTGCAAAGGTGGTCTAGCTTTGGTGCATGAGGAATGTTTAATCAAATGGTTCAGCACAAAAGGAAACAAGAAATGTGATGTATGCTTGGAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATGTCCAGCTCTGTTCAACAAAGAAACAGACAGTTGCAGGATCGCCAAAACTTCAATTCAGAAACACTAAGTGCTTGGCAAGACTTCGTGGTACTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAACTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTTTATCGGCACCGTTTTCCTTTACATTGGGCCTCTTAGCATCTGTTTTCGCAATCGTCCTTGCGATCAAAGAGTATATATGGACATACGCCGCTCTTGAGTTTGCACTTGTGGCTTTAATTGTGCATCTGTTTTATACATATTTGCATTTGGCGGCCATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAGTTGCTATGGGAATCAACTTTATGTATATCCAGTATGTGACGTGGAGACTTCAGGTCTCTACTAATGATGTTCCCGTGTAA 1272 0.4198 MQDQQPLPTHEPPMISHQTETGLNKEVAYSGAGGKRPDISLQVPPRPLGFGSSSTRGRVLDHSQSFSKVISSPKDFLRALSFKKKENVVDGESSSLLNSDPKTAADSTRMASISEISWSRCTSLPVTHAPNLSPIVATPVSARTYNEQRIKPHKDVKSKVSRSLTIPARNVVIVRSVSFVTRNEQEQQDTSDDQITPAPVEVTADEEIPEEEAVCRICLDTCDEGNTFKMECSCKGGLALVHEECLIKWFSTKGNKKCDVCLEEVQNLPVTLLRMSSSVQQRNRQLQDRQNFNSETLSAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIILSAPFSFTLGLLASVFAIVLAIKEYIWTYAALEFALVALIVHLFYTYLHLAAIYSILLSSILGFGVAMGINFMYIQYVTWRLQVSTNDVPV* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4266 423 MobiDBLite consensus disorder prediction 1 56 - -
Psa1g4266 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Psa1g4266 423 CDD RING_CH-C4HC3_MARCH 215 261 - -
Psa1g4266 423 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g4266 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Psa1g4266 423 PANTHER OS02G0165000 PROTEIN 9 423 - -
Psa1g4266 423 SUPERFAMILY RING/U-box 211 264 - -
Psa1g4266 423 PANTHER ZINC FINGER PROTEIN 9 423 - -
Psa1g4266 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Psa1g4266 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4266 Psa-Chr1 338422595 338426508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4266 201 322 C3H Transcription Factor Family AT2G37950 26.718 5.52e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4266 - - gmx:100527094 638.647