Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4262 ATGGAACCCAAACCTCAACCAATTTTCCCTCCGATGGACGCTCCCGAAGATCTTTCCTCCGTTTGGGACCTAAGCTACCTCCTCGACTTCAATCTCGACGACGAGGCATCACTTCCCTTAAGCCTCGACAACGAAACTCCACACCTCCCTCCAATTCCAAACCCTAACCCTAACCCTAACCCTCCGGAGAATGATAAGATCCGAAAACGCGACCCGAGACTTACTTGCTCCAACTTTCTCGCGGGTCATGTACCTTGTGCATGTCCCGAACTCGATGCGCTGCTTGAAGATAATGGTTTACCAGGCAAGAAACGCGCTCGAGCTGCACGTGCGTCTGCATCGGCGCGTTGTCAGGTTCCTAGTTGTGAAGTTGATATCTCTGAACTTAAAGGCTATCATCGAAGGCATAGGGTTTGTTTGCGATGTGCTAATGCTGTTACTGTTCTTATTGACGGCGAGGCAAAAAGATACTGTCAGCAGTGTGGAAAGTTTCATGTCTTACCGGATTTTGACGAAGGTAAAAGGAGTTGTAGAAGAAAATTGGAGCGGCATAATACTAGGAGGCGGAGAAAGCCTGCAGATTCTGTACTAGCGGTTGATCATGAAGTTCAAACTGTTACTCAAAATGATGATTCCAATTGTGATGGAGAAGCAGGGATAGATTATTCGAATTTGAGTAGTGAGAATATTGAAAAAGGAGTGTCCTTGGATCATGAAGAAGAGCAGGTTGCTATTGGGTCTTCAACTCCAGAGACCCAGAATATTAATGGTGAGAGTGGCGTGTCCTTTGTTGCTTCTGCTGAAACACAAGCAAATATTGGAAACGATGTTTCCAATCTTTCCAAATCGCCTTCATATTGTGACAATAAGAATGATTATTCATCTATGTGCCAAACAGGTCGGGTTTCATTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACTCCAAATATTCCAATGGTTAGCAAGTATGCCTGTGGAGCTGGAGGGATATATCCGCCCTGGGTGTACAATCCTGACAATATTTATTGCAATGCCAAATATTATGTGGATAAATTTACTCAAAGACCCTATGTATTATGTACGTGATCTTGTTGCTCCCAAAAAGATGCTATCTGGAAGAGGCACCGCTCTAATTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAAGTTCTGTGACAAAAGTCGAGGTAAACACGCAGGCGCCTAAGCTTCATTACATTCACCCCACATGCTTTGAAGCAGGAAAACCCATGGAATTTTATGCTTGTGGAAGTAACTTGCTGCAGCCAAAGTTTCGGCTTCTTGTATCTTTTTATGGAAAGTATATGAAGTACGAGTATTGTGTTCCGTCTCCACATAACTGGACCGAAGACAGTACTTCTTGTGCTTTTGACAATCAGTTATATAAGATATGTGTCCCTCATATTGACGAAAATCTCATGGGCCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTTATTCCAATACTTATTGGGGATAAAGAAATTTGCACCGAAATGAAGATATTGCAACAAAAACAAGATGCATCTCTCCTTTCTAAACAATTTCGATCTGCATCTGGTGGTTCTATTTGTAGCTCATGCAAAGCTTTTGTACATATTCATACATCATCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAGGATCCTACTTCAGAAATTTTTGACAGAATGGTATCTGCTTCACAGATTCAAAGATATTGCCATTTGTTGGATTTTCTAATAAGCAATGATTCAACTATCATTTTGGGGAAAATATTGCCAAATTTGATAAGTTTAACAGAAAGCATAAAATCCAATACAAATGATGTTGACACTGTCCAGCTACTGAAGTGTATGCATAATGCCAAAGATGCTATTTGTCAGAAAGGTGGAAGTATAGTTTTGCACTCCAAAAGGGAAGGCTTTAAACCTGCCCAGTGCAGTTCTCAAGACGACAAGTTATCAGTTGATGAAGTTAATAGTCAGGGTAACCCATTTAATGCAGATCCAGAGTTGGGGGTTCTGAGAAGTCTTGCTTTTGTTGAAAAAAATCAAAAGGTACCACTTTTGAAAAGGGATATTATAATGAATATGGAAGACTTGCCTAATAGACGTGATCATCAAAATCTTACCCGGGGATTCTTGACCTCTCGACCGACTATTTTTGTACTTGTTTCTGTTGTTGTTTGTCTTGCTGTATGTGTATCCATCTTTCATCAGGGAAGGGTTACCGAGTTAGCAGTATCCATTAGAAGGTGTTTGTTTAACCATTAA 2319 0.4092 MEPKPQPIFPPMDAPEDLSSVWDLSYLLDFNLDDEASLPLSLDNETPHLPPIPNPNPNPNPPENDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDNGLPGKKRARAARASASARCQVPSCEVDISELKGYHRRHRVCLRCANAVTVLIDGEAKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNTRRRRKPADSVLAVDHEVQTVTQNDDSNCDGEAGIDYSNLSSENIEKGVSLDHEEEQVAIGSSTPETQNINGESGVSFVASAETQANIGNDVSNLSKSPSYCDNKNDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPMYYVRDLVAPKKMLSGRGTALIHLNDMIFRVMKDGSSVTKVEVNTQAPKLHYIHPTCFEAGKPMEFYACGSNLLQPKFRLLVSFYGKYMKYEYCVPSPHNWTEDSTSCAFDNQLYKICVPHIDENLMGPAFIEVENESGLSNFIPILIGDKEICTEMKILQQKQDASLLSKQFRSASGGSICSSCKAFVHIHTSSSDLLVDIAWLLKDPTSEIFDRMVSASQIQRYCHLLDFLISNDSTIILGKILPNLISLTESIKSNTNDVDTVQLLKCMHNAKDAICQKGGSIVLHSKREGFKPAQCSSQDDKLSVDEVNSQGNPFNADPELGVLRSLAFVEKNQKVPLLKRDIIMNMEDLPNRRDHQNLTRGFLTSRPTIFVLVSVVVCLAVCVSIFHQGRVTELAVSIRRCLFNH* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4262 772 SUPERFAMILY SBT domain 115 195 IPR036893 GO:0003677|GO:0005634
Psa1g4262 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 770 - -
Psa1g4262 772 Gene3D - 108 178 IPR036893 GO:0003677|GO:0005634
Psa1g4262 772 ProSiteProfiles Zinc finger SBP-type profile. 114 191 IPR004333 GO:0003677
Psa1g4262 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 770 IPR044817 GO:0003677
Psa1g4262 772 Pfam SBP domain 117 191 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4262 Psa-Chr1 337846928 337854142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4262 19 766 SBP-box Gene Family AT5G18830 47.051 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa1g4262 SBP 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4262 - - gmx:100776034 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4262 1 337846928 337854142 Psa1g4262 1 337846928 337854142 ECH