Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4254 ATGAGCGATCAACCACGAGAACCACCTCAACCTTCCTCGAGCAATGACAGCCACAGGTCAGATAGAAAACAAATAGATAAAAAGGAGAGTCCTTCATTAAAAAGCAGACGACTACGACCCGGATTTTCCGATTCGTTTTCTAGTATTGACTTGACAGCTTTAGAGATTGAGGAAGGAAACCAATCTGATTTTTCTCCTAGAAGTCAAGAATCTGAAACACCAAGTTCGAGGGCAAGCACTTCTGATTCTGAGGGAGGTTTAAGAGGCCATCCTAATAATAATCAGTGGCGCGGTTTCTTTAAATTGCTAAAGAAAGGATCACAAATGCCTTTTCAAACGTTTCATCCATTGAAAAATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTAGGGAGGATCTCATCCCATCTCTGAACTCACCGGCCCTTCAGTCTTCTTTTGACGCCGAGTTTTGCTGCTTCAAATCTTCCTGGAAGAATTTCTCTCTCGCTGAGATTCAAGCTGCCACCGATGACTTTAGTCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAGCGGTTGACAAGAGGTTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCATCCATACTTTATGGACCTAGAGAGAAACTGAATTGGAGCCTTAGATTTAAGATTATTTTGGGGACTGCTGAAGGTCTTCGCTATTTGCATGAAGGATGTCAAAGAAGGATCATTCACAAAGATATCAAAGCTTCTAATATTCTTCTCTCCGAGGATTTTGAGCCCCAGATATCTGATTTCGGGCTCGCGAAGTGGTTACCTGATCAATGGACTCACCATACCGTCTCCAAAGTGGAAGGCACATTTGGCTATCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTACGGTGTGCTATTATTGGAACTCATTACCGGACGACAAGCTTTGGACAGTTCACAAAAAAGCCTGGTTATGTGGGCAAAACCTTTGCTATCTAGTAACAACATCAAAGAGCTAGTTGATCCGATTTTAGGCGACACTTATGATGAAGAACAGATGAAACTTGTAGTCTTAAATGCTTCTATGTGTATAGACCAGTCCTCAATACAACGACCGCAAATGAGTGAGGTCTTACGGATACTAAGAGGAGAAGAAGGGAGCTTGAGAATGTTGAAAGAAAGACAGAAGTCTAAACTTCATAGAACATACTCTGAAGAGCTATACGATGCAGAAGACTATAACTCGACGAAGTTTTTGAGCGACCGGGATCGACATATGGAGACTATTTTAGGCACCAGCAATCCAAATTAG 1485 0.4121 MSDQPREPPQPSSSNDSHRSDRKQIDKKESPSLKSRRLRPGFSDSFSSIDLTALEIEEGNQSDFSPRSQESETPSSRASTSDSEGGLRGHPNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDAEFCCFKSSWKNFSLAEIQAATDDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKELVDPILGDTYDEEQMKLVVLNASMCIDQSSIQRPQMSEVLRILRGEEGSLRMLKERQKSKLHRTYSEELYDAEDYNSTKFLSDRDRHMETILGTSNPN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4254 494 MobiDBLite consensus disorder prediction 16 35 - -
Psa1g4254 494 Gene3D Transferase(Phosphotransferase) domain 1 251 465 - -
Psa1g4254 494 ProSiteProfiles Protein kinase domain profile. 174 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4254 494 MobiDBLite consensus disorder prediction 1 15 - -
Psa1g4254 494 SUPERFAMILY Protein kinase-like (PK-like) 159 463 IPR011009 -
Psa1g4254 494 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 27 477 - -
Psa1g4254 494 Pfam Protein tyrosine and serine/threonine kinase 177 384 IPR001245 GO:0004672|GO:0006468
Psa1g4254 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Psa1g4254 494 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Psa1g4254 494 MobiDBLite consensus disorder prediction 1 91 - -
Psa1g4254 494 MobiDBLite consensus disorder prediction 41 90 - -
Psa1g4254 494 SMART serkin_6 174 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4254 494 PANTHER OS08G0249100 PROTEIN 27 477 - -
Psa1g4254 494 Gene3D Phosphorylase Kinase; domain 1 139 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4254 Psa-Chr1 337701790 337705120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4254 145 459 Receptor kinase-like Gene Family AT1G53420 39.319 1.77e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa1g4254 PK_Tyr_Ser-Thr 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4254 - - lja:Lj6g3v1915960.1 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4254 1 337701790 337705120 Psa1g4254 1 337701790 337705120 ECH
Psa1g4254 1 337701790 337705120 Psa6g3405 6 291551940 291554476 ECH
Psa1g4254 1 337701790 337705120 Psa6g3880 6 338805121 338808270 ECH