Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4243 ATGGCATCACTGGTTGCCAGTGGGAGCAGTCAAATGTCTTCTTCAGTTTCTGTCCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTGGGAGATCCAAGTAAGGTTATACCTTCACTTCAACATGAGGGCCTCAGTTATGAATTCTCTGCTGAAAAAGTTGAAATGACCCCATGTTTTGGGCAAGTCACAGCTTCTGACTTGTGCAGTGGTAGCCATGATTGTTCTGATGGTTTGAAGCTTGACCTTGGATTATCTAGCCCAGCAATTCCATCCGAGGTTAGGCATAGCCATCATAAGGATGAACTAGAGGTGGTTGAATCCCATGGGGTTGATTGGAGTGATCACACAGAAACTCAGTTGGAAGGACTTCTCCTGAGCAATTTGCATACCATTTTCAAGAGTGCAATAAAAAAAATTGTTGCTTGTGGCTACACTGAAGATGTTGCTACAAAGGCTATGTTAAGGCCTGGCATCTGTTATGGATGCAAAGATACTGTATCTAATATAGTTGATAACACATTGAATTTTCTAAGAAACGGCCAAGAGTTTGATCCTTCACGAGAGCATTATTTTGAAGATTTAAAGCAGCTTCAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTTTTCAGTGTTGGTGATGCAATGTGGTGTTTGTTAATTTGTGACATGAACGTGTCCTATGCTTGTGCAATGGATGGCGACCCTCTAAGTAGTTTATACAGTGATGGCGTTGGTGATGGCTGTTCTTCTGTCCAGACTGAATCTCAATCGAAAGTGGAAACTAAAGGTCCTGGGTTGAGTCTTCCAAGTCCTTGTAATACAATTCCCCTGGGTTCCCAATCTGAGAAATCCTTTGTGGCGGAAAATTCTCAAGTTCCCGGTGGACTCTTGGAGAAACAGGTTGCTAATTCTGGATTTCATCCTGTTGACAAGTCATCTAGTGCTTTTGCAACCTCTCAATTTCCCCTGCTACAAGATAAGGGTGGAATTGTTAGAAAGGTCCACCCCAGTAGCACCAAGAGGGACTACATATTTCGTCAGAAGTCCATCCATGTGGAAAAAGGTTATCGGACATACGGGTCTAAAGGGTCTTCAAGAGGAGGGAAGCTGAGTGGCCTGAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGTATCAGAATCTACTACCATAAACTTAAAGAGTGCATCCATAAACATAAGCAAGGCAGTCGGAGTTGATGTCACTCAAGACAATCTTAACACTACTCGCCCATCTAATGAAGGACAATCTACCCATACTTCATTTAGTCTGGATCCTAGTGATGCTATTTCTCGTGCAGCCGATTCTTCATCTTCAGAACATGAAGCAAATGCTAAGCCTGCAGTCGGTGGCCCTCCAGATGCATTATCAGCTACAGATACTGACCTTTCTCTTTCACTGTCTTCAAAAAGCAGTTCTTCTAAGACACCTATCTGCTGCAATCACAAGGGTACCAGTTGTGTTGGGATACCATATGACAAGTCCATGGGACAATGGTTGCCCCAAGATAGAAAGGATGAGCTGATTTTGAAGATGGTTCCGAGGGTTCGGGAGCTACAAAATGAGCTTCAAGAATGGACAGAATGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGGTTGAGTAAGGAGAAGGCCGAGCTTAAGGCACTTAGGCAAGAGAAAGAAGAAGTTGAACGACTTAAAAAGGAGAAACAGTGTCTAGAAGAAAACACCATGAAAAAGCTTTTTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAAGTGGATCGAGCTAATACTGCAGTACGGAAGCTGGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAGATTGCTAAGTTGCGTGCGGCAGAATCAGCTACAAACTTTCAAGATGTCTCTAAGAGGGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAATCAGAAATCGTTGATACAGGAAGAGCTAATGACTGAAAAAAACAAATTGGCACAGATATTGACGGAATCAAAGCAAGTCGAAGCACAAGCGGAGCAATTCGAGGCTAAACGGCGGCAGGCAGCAAAGAAAACTGAAGAACTTCTCTCACTGGCCAGTTCTCTAAAAAAAGAACGAGAACAAATTGAGGAGTCAGGCAGAGCCAAGGAGGAGATGATCAAATTAGAAGCGGAGGCGGAACTGCAAAGATACAAAGATGACATCCAGAAACTTGAAAAAGAAGTTGCACAAATAAGGCAGAAATCCGACTCTTCAAAAATTGCTGCTCTCAAAAGAGGAATCGATGGAAGCTATGCCGGTAGCTGGAAGGACATGAAAAAGGGTTCAACTTTTGATGAACCCCAGAACGCATCTATTTCAGAACTGGTCCAAAAGTTAAATAGCTTCTCTATGACAGGAGGAGGTGTGAAACGGGAAAGAGAGTGCGTGATGTGCCTTTCGGAGGAGATGTCTGTCGTATTCCTTCCATGTGCTCATCAGGTTGTTTGCACAAAATGCAATGAGCTCCATGAAAAACAAGGTATGCAGGATTGTCCTTCATGTAGGAGCCCCATCCAGGAGCGGATTTCTGTGCGTTATATGCGTACATAA 2640 0.4322 MASLVASGSSQMSSSVSVQEKGSRNKRKFRADPPLGDPSKVIPSLQHEGLSYEFSAEKVEMTPCFGQVTASDLCSGSHDCSDGLKLDLGLSSPAIPSEVRHSHHKDELEVVESHGVDWSDHTETQLEGLLLSNLHTIFKSAIKKIVACGYTEDVATKAMLRPGICYGCKDTVSNIVDNTLNFLRNGQEFDPSREHYFEDLKQLQKYILAELVCVLREVRPFFSVGDAMWCLLICDMNVSYACAMDGDPLSSLYSDGVGDGCSSVQTESQSKVETKGPGLSLPSPCNTIPLGSQSEKSFVAENSQVPGGLLEKQVANSGFHPVDKSSSAFATSQFPLLQDKGGIVRKVHPSSTKRDYIFRQKSIHVEKGYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTTINLKSASINISKAVGVDVTQDNLNTTRPSNEGQSTHTSFSLDPSDAISRAADSSSSEHEANAKPAVGGPPDALSATDTDLSLSLSSKSSSSKTPICCNHKGTSCVGIPYDKSMGQWLPQDRKDELILKMVPRVRELQNELQEWTEWANQKVMQAARRLSKEKAELKALRQEKEEVERLKKEKQCLEENTMKKLFEMENALGKAGGQVDRANTAVRKLEMENAALRKEMEIAKLRAAESATNFQDVSKREKKTQMKFQSWENQKSLIQEELMTEKNKLAQILTESKQVEAQAEQFEAKRRQAAKKTEELLSLASSLKKEREQIEESGRAKEEMIKLEAEAELQRYKDDIQKLEKEVAQIRQKSDSSKIAALKRGIDGSYAGSWKDMKKGSTFDEPQNASISELVQKLNSFSMTGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNELHEKQGMQDCPSCRSPIQERISVRYMRT* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4243 879 MobiDBLite consensus disorder prediction 1 20 - -
Psa1g4243 879 PANTHER OS05G0141500 PROTEIN 4 878 IPR046934 -
Psa1g4243 879 Pfam Zinc finger, C3HC4 type (RING finger) 822 870 - -
Psa1g4243 879 Coils Coil 877 879 - -
Psa1g4243 879 ProSiteProfiles Zinc finger RING-type profile. 825 865 IPR001841 -
Psa1g4243 879 Coils Coil 730 771 - -
Psa1g4243 879 MobiDBLite consensus disorder prediction 428 463 - -
Psa1g4243 879 SUPERFAMILY RING/U-box 807 872 - -
Psa1g4243 879 Pfam Family of unknown function (DUF6592) 133 244 IPR046527 -
Psa1g4243 879 Coils Coil 680 728 - -
Psa1g4243 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 876 IPR013083 -
Psa1g4243 879 MobiDBLite consensus disorder prediction 428 489 - -
Psa1g4243 879 Coils Coil 551 591 - -
Psa1g4243 879 Coils Coil 610 637 - -
Psa1g4243 879 MobiDBLite consensus disorder prediction 1 39 - -
Psa1g4243 879 PANTHER OS05G0141500 PROTEIN 4 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4243 Psa-Chr1 337246724 337252084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4243 825 874 C3H Transcription Factor Family AT1G73950 44.000 6.19e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4243 - - gmx:100777140 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4243 1 337246724 337252084 Psa1g4243 1 337246724 337252084 ECH