Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4236 ATGGGTTGTGTTCATGGAAAGTGTTGTAGTCGTTACCCTGCACCATCAATTGGTGGTTCTAGGGATTATAGAGAGCTTGGTCCGCAAAGGAAGCATGTTCTCACACAGAGATCACTTCATTTTGTTGATGTTCCTTCTCACAACTTCACTGTGGAGTATTCTGTTTTTACACAGAGAGGTTACTACCCTGACTCACCTGATAAAGAGAATCAAGATTGTTATTGTGTAAAGAGTCAATTGCAAGGTAACCCTAATGTTCATTTCTTTGGTGTTTTTGATGGACATGGTGAATTTGGGGGACAGTGTTCTAATTTTGTTAAGAATAGGTTGGTAGAAAAACTGTCGAATGATTCTGCGTTGTTAGAGGATCCTGTTAAGGCTTATAATTCAGCTTTTTTGGATACTAATGATGAATTGCATAAGAATGAGATTGATGATTGTATGAGTGGTACTACCGCGATTACGGTTCTGGTTATAGGGGATATGCTTTATGTTGCGAATGTTGGTGATTCGAGGGCGGTGTTGGCTGTTAAAGATGGGAATAGAATTGTTGCTGAGGATTTGTCTTCTGATCAGACACCGTTTCGGAGAGATGAATATGAGAGAGTGAAGCTTTGCGGTGCTAGGGTCTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAAAGTTGGGGCGATGAAGAGAGTCAGGGCGACGATCCTCCGCGATTGTGGGTTCAGAATGGGATGATTCCGGGAGCTGCTTTTACAAGGAGTGTAGGGGATAGTTTGGGTGAGACTATCGGGGTTATTGCGGTTCCGGAGGTGTTAACGGTTCAGCTTACGCCGAATCATGTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCCGCAAGTTATTCAGATCCCCGCGATGCGTGTGCTGCCATTGCTGGAGAGTCTTATAAATTATGGTTGGAACATGAAGGTCGAACAGACGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAACTCAGGTACATCTGAATACGGATCAGGAGAGATCAATTTCAGCGCTGTAACAAAAGTCAAGAAGGGAAAGGGAACTTCTGGTGTATCTGCTACCAACGGTCTAGATGTTCACCGTGCCATGAGGACTGGTTTACCTGATTCACTGTCCTGTCAGCACGTGGTCTCGTCGAGAAGCCAAGCCATAGTGGTTCCCTCTCCCACATGTCAAAGTCCAGTTGAATTGTGA 1266 0.4376 MGCVHGKCCSRYPAPSIGGSRDYRELGPQRKHVLTQRSLHFVDVPSHNFTVEYSVFTQRGYYPDSPDKENQDCYCVKSQLQGNPNVHFFGVFDGHGEFGGQCSNFVKNRLVEKLSNDSALLEDPVKAYNSAFLDTNDELHKNEIDDCMSGTTAITVLVIGDMLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQSWGDEESQGDDPPRLWVQNGMIPGAAFTRSVGDSLGETIGVIAVPEVLTVQLTPNHVFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTSEYGSGEINFSAVTKVKKGKGTSGVSATNGLDVHRAMRTGLPDSLSCQHVVSSRSQAIVVPSPTCQSPVEL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4236 421 CDD PP2Cc 68 342 IPR001932 -
Psa1g4236 421 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
Psa1g4236 421 Pfam Protein phosphatase 2C 79 317 IPR001932 -
Psa1g4236 421 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 30 416 - -
Psa1g4236 421 Gene3D - 38 344 IPR036457 -
Psa1g4236 421 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Psa1g4236 421 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Psa1g4236 421 SMART PP2C_4 48 340 IPR001932 -
Psa1g4236 421 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 30 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4236 Psa-Chr1 336969422 336972834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4236 1 347 PP2C-type Phosphatase Gene Family AT3G06270 72.622 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4236 - - mtr:MTR_2g020970 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4236 1 336969422 336972834 Psa1g4236 1 336969422 336972834 ECH