Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4230 ATGATTGTAAAGGAGCATGCTGTTGGGACTGAACTGGTAATGAGTAATGTCATTGGGGAGGAGGAAATTGATTTTTCTTGTGATCCATACGTAGGGTTGGAGTTTTTCCATGCGGATGATGCGCTTAGGTATTATATATCATACGCTACTCGAATGGGATTTAAAGTTCGTATTGGTCAGCTTTATCGATCCAGGACTAATGGATCGGTTTCTTCTCGAAGATTTGTGTGCTCGAAGGAGGGACATCAGCTCAGCTCAAGAACTGGCTGTCCAGCATTCATAAGGGTGCAGTTAAATGATTCTGGAAAGTGGGTTGTTGATCATTTTCACAAGGAGCATAACCACAACCTTGAAAATGAAAGTGAAAATTTCGCTCCATCATTGCAGCCAATAGCTTCTGCCACCGTTGATTCTTCAACTGGAATCACTCGCAGGCCAAGGAAGAAATTGCTTGAAGTAGCCAATGGTGAACCTATTTGTCCCTTTGGTGTTATTAATTTCAAGCGTCTGAGAAAAGAAGAACTTGAAGGACAGGCCAGGATCGAACCACATGTGGGTCAAGAGTTCAGTAGCCCTGTTGAAGCCTACCAATTTTATCACGCCCATGCAGCATATAAGGGTTTTAGAATTCGAAATGGTCAATTGTTCCGTTCTAAAAATGACGGGGGTATTACATCACGACGCTTTGTGTGTTCAAAAGAAGGGTTCCAGCACCCTTCAAGAGTTGGTTGTAAGGCCTATTTAAGGATTAAGAGACAGCCATCAGGAAAGTGGGTAGTCGACCGTCTTGAAAAAGATCATAATCATGACCTGAGCCCTGAAAAGGAACATAGGACAGCAAGTCTTCCTGCTTCTAATATTTTAACTGAGGAGGTAAACACTGAATTGGTGAACAGCGATATATTTAGGATAGATAACTACCCTGTCCTGAGAGGGGGTAGACAAAATCACATCAGAAGTGATTGGTATAACATGCTTTTAGAGTATTTTCAATCAAGACAAGCTGAAGATACAGGTTTCTTTTATGCCATGGAAGTTGATAATGGCAATTGCATGAGCATATTCTGGGCGGATGGCAGATCTAGATACTCATGTAGTCAGTTTGGCGATGTCCTCGTTGTAGACACATCGTATAGAAAGAGCCTCTCTATGGTACCATTTGCTACCCTTGTGGGGGTTAATCACCACAAACAACCTGTCCTTCTTGGATGTGCTCTAATTGCCGATGAATCTGAAGAGTCATTCACTTGGCTGTTACAGACATGGCTAAGAGCAATGTGTGGTCGGCAGCCTCTCTCAGTAATAGCTGATCAAGACGTTTCAATCCAGAGAGCAGTAGCAAAAGTATTTCCAGTAACCCATCACCGCTTTTCATTGTGGCAAATTAATGCAAAGGAACAAGAGCTTGCAGGTCTGATGGGTCATGGATTCACAAAAGATTATGAAAAGTGTGTTTACCAGAGCCAGACAGTTGATGAATTTGACACCGCGTGGAATGCTCTACTCATCAAATATGGATTGAAGGACAATTCTTGGCTAAAAGAAATGTACGAGAAACGTGCATCCTGGGTTCCGTTCTATATAAAGAGCACATTTTCTGCTGGAATTCCTTTGAAAGAAAGCATGGAATCATTCTTTGGTGCACTTGTAAATGGTCAAACACCTCTCCCAGAGTTCATTCAACGGTACGAAAGAGGTCTTGAGCGACGTCGTGAAGAAGAAAGAAAAGAGGATTTTAACACTTCTAATTTTCAAACCTTTTTGCAAACAAAAGAACCTGTAGAAGAACAGTGTAGAAGGCTTTACACTCTTGCAATATTCAAAGTATTTCAAAAAGAGCTTTTGCAGTGCTATAGTTATCTTGGGTTTAAAATCTACGAAGAAGGGCCCCTTAGCAGATATTTGGTGCGCAAGTGTGGAAATGAGGATACGGAGAAGCATGTAGTTACATTCAATGCATCCAATATTGATATTAATTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACATGTGTTGAGGGTTTTCCAAATACTGGAATTAAGAGAAGTTCCTTCGCGCTACATCCTACACCGCTGGACCAGAAATGCTGAGGATGGTGTTTTTCCTGACATAGAATCATGGAGTAGCTCCCAGGAGCTAAAAAGTTTGATGCTATGGAGTCTAAGAGAAACGGCATCTAAATACATAGATGCTGGCGCATCATCCATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGTGAGGGTGGGAGAAAGCTTTGCTGGCACAGGTGA 2286 0.4164 MIVKEHAVGTELVMSNVIGEEEIDFSCDPYVGLEFFHADDALRYYISYATRMGFKVRIGQLYRSRTNGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKEHNHNLENESENFAPSLQPIASATVDSSTGITRRPRKKLLEVANGEPICPFGVINFKRLRKEELEGQARIEPHVGQEFSSPVEAYQFYHAHAAYKGFRIRNGQLFRSKNDGGITSRRFVCSKEGFQHPSRVGCKAYLRIKRQPSGKWVVDRLEKDHNHDLSPEKEHRTASLPASNILTEEVNTELVNSDIFRIDNYPVLRGGRQNHIRSDWYNMLLEYFQSRQAEDTGFFYAMEVDNGNCMSIFWADGRSRYSCSQFGDVLVVDTSYRKSLSMVPFATLVGVNHHKQPVLLGCALIADESEESFTWLLQTWLRAMCGRQPLSVIADQDVSIQRAVAKVFPVTHHRFSLWQINAKEQELAGLMGHGFTKDYEKCVYQSQTVDEFDTAWNALLIKYGLKDNSWLKEMYEKRASWVPFYIKSTFSAGIPLKESMESFFGALVNGQTPLPEFIQRYERGLERRREEERKEDFNTSNFQTFLQTKEPVEEQCRRLYTLAIFKVFQKELLQCYSYLGFKIYEEGPLSRYLVRKCGNEDTEKHVVTFNASNIDINCSCQMFEYEGVLCRHVLRVFQILELREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKSLMLWSLRETASKYIDAGASSIEKYKLAYEILREGGRKLCWHR* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4230 761 ProSiteProfiles Zinc finger SWIM-type profile. 647 683 IPR007527 GO:0008270
Psa1g4230 761 Pfam SWIM zinc finger 654 680 IPR007527 GO:0008270
Psa1g4230 761 Pfam MULE transposase domain 371 464 IPR018289 -
Psa1g4230 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 757 IPR031052 GO:0006355
Psa1g4230 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 119 IPR031052 GO:0006355
Psa1g4230 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 147 757 - -
Psa1g4230 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 26 119 - -
Psa1g4230 761 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Psa1g4230 761 Pfam FAR1 DNA-binding domain 197 272 IPR004330 -
Psa1g4230 761 SMART 26again6 658 685 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4230 Psa-Chr1 336753152 336756958 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa1g4230 MULE 1e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4230 - - gmx:100816656 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4230 1 336753152 336756958 Psa1g4230 1 336753152 336756958 ECH