Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4223 ATGGCTTCCCTTACTTTCTTCAGAAAACGCCTCCTCCTATCTTTCCATTTCATATCTTCTTCCACCAACAACAATGTTGCATCTCCTCTTGCTTCTCTCCACAGATCTATGGCCACTTTCACAAGAACAAAACCTCATCTAAATGTTGGCACAATTGGCCATGTAGATCATGGGAAAACCACACTAACTGCTGCAATTACAAAGGTACTAGCTGATGAAGGTAAAGCCAAGGCCATTGCTTTTGATGAAATAGACAAAGCTCCTGAGGAGAAGAAAAGAGGAATTACTATTGCCACAGCTCATGTTGAATATGAGACAGCAAAGAGGCATTATGCTCATGTTGATTGCCCTGGACATGCAGACTATGTTAAGAATATGATAACTGGAGCTGCACAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGTCCAATGCCTCAAACCAAGGAGCATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCACTGGTCTGCTTTCTAAATAAAGTAGATACCGTTGATGATCCGGAGTTACTTGAACTTGTCGAAATGGAACTTCGTGAACTACTTAATTTCTTTAAATTTCCTGGGGATGAGATCCCAATTGTGAGAGGTTCGGCTCTGTCTGCATTGCAAGGGACTAACGAAGAACTTGGAAAGAAAGCTATCTTGAAACTAATGGATGCTGTCGATGAATACATTTCTGATCCCGTCCGGCAGCTTGACAAGCCTTTTTTAATGCCAATTGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACTGGTCGTGTTGAACAAGGCACTATCAAAGTAGGTGAAGAGGTTGAAATATTAGGACTAACACAGGGTCCACCTGTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATAGAGGGCAAGCTGGTGATAATGTAGGACTTCTTCTACGAGGTCTTAAGCGAGACGATGTACAGCGCGGAATGGTTATCACGAAGCCTGGCGCATTGAAAACTTATAAGAAGTTTGAAGCGGAGATTTATGTCCTCTCAAAAGATGAAGGTGGCCGACATACTGCATTTTTCTCTAACTATATGCCTCAGTTTTACCTGAGGACTGCGGACATTACTGGAAAAGTGCAATTACCTGAAAACGTCAAGATGGTTATGCCTGGTGATAATGTGACCGCAACGTTTGAGCTGATATTACCTGTTCCTCTTGAACTTGGACAAAGATTCGCTTTGAGAGAAGGAGGCCGGACAGTTGGTGCAGGAGTGGTCTCGAAAGTGATTTCCTAA 1299 0.4311 MASLTFFRKRLLLSFHFISSSTNNNVASPLASLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDTVDDPELLELVEMELRELLNFFKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEILGLTQGPPVKTTVTGVEMFKKILDRGQAGDNVGLLLRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLELGQRFALREGGRTVGAGVVSKVIS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4223 432 CDD EFTU_II 247 335 IPR033720 -
Psa1g4223 432 Pfam Elongation factor Tu GTP binding domain 44 237 IPR000795 GO:0003924|GO:0005525
Psa1g4223 432 Hamap Elongation factor Tu [tuf]. 35 432 IPR004541 GO:0003746|GO:0005525|GO:0006414
Psa1g4223 432 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 341 432 IPR009001 -
Psa1g4223 432 PANTHER ELONGATION FACTOR TU 22 432 - -
Psa1g4223 432 Gene3D - 36 239 IPR027417 -
Psa1g4223 432 PANTHER ELONGATION FACTOR TU-RELATED 22 432 - -
Psa1g4223 432 CDD EFTU_III 338 427 - -
Psa1g4223 432 Pfam Elongation factor Tu C-terminal domain 337 430 IPR004160 -
Psa1g4223 432 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 85 100 IPR031157 -
Psa1g4223 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 262 IPR027417 -
Psa1g4223 432 Gene3D Translation factors 376 431 - -
Psa1g4223 432 TIGRFAM small_GTP: small GTP-binding protein domain 48 185 IPR005225 GO:0005525
Psa1g4223 432 Pfam Elongation factor Tu domain 2 261 332 IPR004161 GO:0005525
Psa1g4223 432 Gene3D Translation factors 242 372 - -
Psa1g4223 432 TIGRFAM EF-Tu: translation elongation factor Tu 36 431 IPR004541 GO:0003746|GO:0005525|GO:0006414
Psa1g4223 432 SUPERFAMILY Translation proteins 241 337 IPR009000 -
Psa1g4223 432 PRINTS GTP-binding elongation factor signature 48 61 IPR000795 GO:0003924|GO:0005525
Psa1g4223 432 PRINTS GTP-binding elongation factor signature 92 100 IPR000795 GO:0003924|GO:0005525
Psa1g4223 432 PRINTS GTP-binding elongation factor signature 112 122 IPR000795 GO:0003924|GO:0005525
Psa1g4223 432 PRINTS GTP-binding elongation factor signature 128 139 IPR000795 GO:0003924|GO:0005525
Psa1g4223 432 PRINTS GTP-binding elongation factor signature 165 174 IPR000795 GO:0003924|GO:0005525
Psa1g4223 432 CDD EF_Tu 45 239 IPR041709 -
Psa1g4223 432 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 44 240 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4223 Psa-Chr1 336577871 336580496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4223 42 430 Eukaryotic Initiation Factors Gene Family AT5G60390 30.137 7.71e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4223 K02358 - gmx:102667962 744.191