Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4220 ATGCAACATGATCAGAGGAAAAAGTCGTCAGTGGAAGTAGATTTCTTTACTGAATATGGTGAAGGGAGCAGATACAAGATAGAAGAAGTGATTGGTAAAGGAAGTTACGGTGTTGTTTGCTCTGCGTTTGATACACACACTGGAGAAAAGGTTGCTATAAAGAAAATCAATGACATATTTGAACATGTATCTGACGCGACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTTTTACGTCATCCGGATATTGTAGAGATCAAACATATTTTGTTGCCTCCTTCAAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAACGATGATCTGACACCAGAGCATTACCAGTTTTTCCTCTATCAACTTCTTCGAGGCTTGAAGTATATACACACAGCTAATGTTTTTCACCGAGATTTGAAGCCAAAAAACATTTTGGCGAATGCCGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTAGCTTTTAATGACACACCCACGGCTATATTCTGGACAGATTATGTTGCAACAAGGTGGTATAGGGCTCCCGAGTTGTGCGGGTCCTTTTTCTCCAAGTATACACCAGCTATAGACATATGGAGCATTGGCTGCATATTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCCGGGAAGAATGTTGTCCATCAATTGGATATCATGACTGATTTTCTTGGAACACCATCTCCTGATGCCATTGCAAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAGCCAGTTCCTTTCGCGCATAAATTTCCTAATACAGACCCCCTTGCTCTACGGCTGTTAGAAAGAATGCTGGCATTTGAAGCTAAGGATCGTCCTACTGCTGAAGAGGCCCTAGCGGATCCTTATTTTAAAGGCTTGGCCAAGGTCGAGAGAGAACCTTCTGCTCAGCCAGTTACTAAGATGGAATTTGAATTTGAGAGGCGGAGGATAACAAAGGAAGATGTAAGAGAGCTTATATACCGAGAAATATTGGAGTACCATCCGAAGATGTTAAAGGAATTTCTAGAGGGTTCAGAGCCAACGGGTTTCATGTATCCAAGTGCTGTAGACCTTTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGGGGAACTGTTGCTCCACCTGAGCGGCAGCACGCGTCTTCGTTGCCTAGAGCGTGTGTGTTGTATTCTGATAACACGATGCAGAATACGGCCGAGGTTGCAGAGGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACTGCCTGTAGATAGGAGTAGTGCTATTCTTCCGATGACTCGGCTTCCTTTACAAACTCCTCAAAACATTCAAGGTCTTGCTGCAAGGCCCGGAAAAGTTGTTGGTTCTGCAATGCATTATAACAACTGTGGTGTGGCAGCAGAAACCGAACAGCGGAGGGTGGTTAGGAACGCATCTGTTTCGAATCAGTATGCTGCTTCAAGCTATCCGCGGAGAAATCCAAATTATAAAAGCGAGAGAATCGAAGATGATGGGATTGAAGGTTCTAACGGGATGCAGCCAAAGCCTCAATACATAGCAAGGAAAGTTGCTGCTGCTCAAGGCGGAGCAGGTAGTCAGTGGTATTGA 1683 0.432 MQHDQRKKSSVEVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAFDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKKPVPFAHKFPNTDPLALRLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGSEPTGFMYPSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDNTMQNTAEVAEDLSKCCIKEVEKLPVDRSSAILPMTRLPLQTPQNIQGLAARPGKVVGSAMHYNNCGVAAETEQRRVVRNASVSNQYAASSYPRRNPNYKSERIEDDGIEGSNGMQPKPQYIARKVAAAQGGAGSQWY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4220 560 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4220 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Psa1g4220 560 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4220 560 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Psa1g4220 560 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Psa1g4220 560 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4220 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Psa1g4220 560 MobiDBLite consensus disorder prediction 510 537 - -
Psa1g4220 560 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Psa1g4220 560 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Psa1g4220 560 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Psa1g4220 560 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4220 Psa-Chr1 336545607 336549797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4220 1 560 MAP Kinase Gene Family AT5G19010 80.105 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Psa1g4220 Pkinase 7.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4220 - K04371 gmx:100814013 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4220 1 336545607 336549797 Psa1g4220 1 336545607 336549797 ECH
Psa4g0711 4 44293602 44298901 Psa1g4220 1 336545607 336549797 PCT