Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4197 ATGATTATCCCAGTGGCAGCAACATCATCCTCTGCCTGCAAACAAGAATTGCCTCTAATAAATTTCCAAAAGGGACTCACCAAAATGGAGTCATTATTTCACAATAGAAACAAAGATAAGGTGGTAGTGATAATGGGGGCCACAGGTACTGGAAAGACCAAATTAGCCATAGATTTGGCCAAACATTTTCAACCATCTGAAATTGTTAATTCAGATAAAATACAAGTTTATAAAGGTCTTGACATAACAACAAATAAGGTAACAGAACAAGAATGTGATGGGGTCCCACATCATCTTTTAGGTTCATTTGATCCTACAACAAACTTCACTGCCAATGATTTTTGTTACCATGCTTGTTCAGCTATTGATTCAATTGTGCAAAAAGATGGGTTGCCTATTATTGCTGGTGGTTCAAATTCTTATTTAGATACCTTGGTGAATCATTGTAGTGAATTTAGGTTAAGGTATGAGTGTTGTTTTCTTTGGGTTGATGTTGCACTTCCTGTCCTTCATTCTTCGCTTCAATCGCGTGTTGATCGCATGATTGAAGCTGGTCAGGTAGATGAAGTTCGTGAGTTTTTTGATCCTTCGGGTGATTATACTAAAGGGATTCGAAGAGCTATTGGAGTGCCTGAATTTCATGATTTTCTTACTGCAGAAGCAAATTCAGCCGATGAGAGAACTAAGAAAAAGCTTCTTGAAGCCGCTATTACTAGGGTTAAGATTAATAATTGCACTCTTGCAAATCGACAACGACAAAAGATTCAAAGATTAAATGGAATGTGGAAAAGAAGCATGTATCGTCTTGATGCCACTGAAACAATCATTAGAAGTGGAACACGTGCTCGAAAGGAAACATGGGAGGACCAAGTACTCTCAAAGAGTCTTATAATCCTCTACAACTTCCTTTATGGTGAAACTCGTGTTTGCTCGAGAAATGTTTCACCTAAAAATATAATTGACGCTCTTTCTGGATCACAGCCGACACTAACATTGTCGGCGGTCGCGGCGGCCACCCATTAA 1023 0.3881 MIIPVAATSSSACKQELPLINFQKGLTKMESLFHNRNKDKVVVIMGATGTGKTKLAIDLAKHFQPSEIVNSDKIQVYKGLDITTNKVTEQECDGVPHHLLGSFDPTTNFTANDFCYHACSAIDSIVQKDGLPIIAGGSNSYLDTLVNHCSEFRLRYECCFLWVDVALPVLHSSLQSRVDRMIEAGQVDEVREFFDPSGDYTKGIRRAIGVPEFHDFLTAEANSADERTKKKLLEAAITRVKINNCTLANRQRQKIQRLNGMWKRSMYRLDATETIIRSGTRARKETWEDQVLSKSLIILYNFLYGETRVCSRNVSPKNIIDALSGSQPTLTLSAVAAATH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4197 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 30 307 IPR039657 -
Psa1g4197 340 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 30 307 - -
Psa1g4197 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 266 - -
Psa1g4197 340 Pfam IPP transferase 75 149 - -
Psa1g4197 340 Pfam IPP transferase 155 253 - -
Psa1g4197 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 154 IPR027417 -
Psa1g4197 340 Gene3D - 38 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4197 Psa-Chr1 335066179 335068547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4197 155 319 C2H2 Transcription Factor Family AT2G27760 31.937 2.53e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4197 K10760 - gmx:100812928 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4197 1 335066179 335068547 Psa1g4197 1 335066179 335068547 ECH