Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4193 ATGGGTATTTCGTGGAGCAGTAGTAGAAGAAGAAACAATTTCATTCACAATCCACCTCAACAACCACCTTCACTTCCACCACCACCACCACCACCTCATTATTATTACTCAACTGAATCACATCCGCCGCCACCACCACCACCTCACCAGCAAGGTTACTATTATCCCTCAACCACCACCGGCTATGCAACTACCCATCCTCCTCCTCCTCCTCCTTCTCTTCAACCTCAGACCCATTCATTTTACTTCTCTAACCCTAATTCAAACGTCAACTACGCCAATCCTCGTGTCATGTTCCATCCTTCTTACTATGTAAATCAACACGCCTGGGGTCCACCTCCTCCTCCTTTACCTTCTTCTTCCGCTCCACCTCCATATGTTGATCATCAAACTGCTAAGAAAATTAGGAACCATGTCAATGTTCATAAAGATACTTTGCGCCTTGAAGTTGATGAGCATAACCCTGATCACCATCTTGTTTCTTTCGTTTTCGATGCTGTATATGATGGCAGCATTACTGTCTCATACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGTTGGCCAGAAATTTGCCCAGCCTTCAGGAACTGGGATTGACCTGGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGAAAACGAAACTCCTAAAACTCCTGATGATTCTGTGCTAAATTCGTCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAACGTAACGGTGCTTTCCAGATAAAAGTAATTAAACAGATTCTGTGGATTGACGGTGTTCGCTATGAGTTGAGAGAGCTATATGGAATAGGAAACTCAGAAGCTTCAGGATTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACACATGTGTATGTGCAGTGACTGTGCAAAAGCTCTGCGCCTTCAATCAAATAAATGCCCTATATGCCGTCAGCCCATTGAGGAACTTATGGAGATCAAGGTGAAGAGTGGCGATCCATGA 1143 0.4427 MGISWSSSRRRNNFIHNPPQQPPSLPPPPPPPHYYYSTESHPPPPPPPHQQGYYYPSTTTGYATTHPPPPPPSLQPQTHSFYFSNPNSNVNYANPRVMFHPSYYVNQHAWGPPPPPLPSSSAPPPYVDHQTAKKIRNHVNVHKDTLRLEVDEHNPDHHLVSFVFDAVYDGSITVSYFAKEEDKCRFVPLFPDAFVPVKVPFEKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENETPKTPDDSVLNSSPHMQITQAVLEKRNGAFQIKVIKQILWIDGVRYELRELYGIGNSEASGFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSDCAKALRLQSNKCPICRQPIEELMEIKVKSGDP* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4193 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
Psa1g4193 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 374 IPR013083 -
Psa1g4193 380 PANTHER MAHOGUNIN 1 379 IPR045194 GO:0061630
Psa1g4193 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 379 - -
Psa1g4193 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Psa1g4193 380 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 324 364 IPR045195 -
Psa1g4193 380 SUPERFAMILY RING/U-box 324 370 - -
Psa1g4193 380 MobiDBLite consensus disorder prediction 1 55 - -
Psa1g4193 380 SMART ring_2 325 363 IPR001841 -
Psa1g4193 380 MobiDBLite consensus disorder prediction 19 52 - -
Psa1g4193 380 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4193 Psa-Chr1 334866890 334877446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4193 110 379 C3H Transcription Factor Family AT3G06140 62.230 4.98e-115 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4193 1 334866890 334877446 Psa1g4193 1 334866890 334877446 ECH