Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4181 ATGGCGAATTTCAGTTCTTTCTCTTCTTCATCTTCCACTCCTCCTCCCCCTCCGTCTTTCTCGTACATTTCAGCTCCGTCTTCTTCTTCACTCTTCGATGATGATTCTTCTGAGGATTCATGTAGTATTTGCTTAGAGTCCTTCAGCGTTCATGACCCATCCACTGTTACCTGTTGCAGACATGAATATCACCTGCATTGCATACTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTTGTTGCTGTGGAGGCTGAAAAATGCTTAAGATCAAGAAACAATTATTCATCTTCACTCACTAATTCTTCTGTTCCTTTTGAACGTTTTAATGGTGACCATGATGCTTCTCGCTCAGATGACATTGATTTTGATGAGCAAATTATGCAGCACCTATATGCCGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAGAGAAGAGAAGGATCGTCCGGAGCAGGTCCATCAGAGGTATCTGTGGTGCAACCGACTCTTACAACTTCACCGGCTGGTAGTAGTTCTCTGACCACTGGTCTACCATCGACTGCCGACCTTCATCCCGTGGTTGCAAGAAACAATAGCCCTGAGACTGATGTTTCTTACCGACCCAGAGTTCTTTACAGTCCGTCACCACCTCAGGATGAGAGGAAAATAAATACTTCTGAGGTGTTCTCCTTGCCGGAGTCCATCAAATCCAAACTTTCTGCCGCTTCAGCCAGATATAAGGAATCAATTTCCAAAGGTACCCGTGGACTCAAAGAGAAGTTACTTGCTCGAAATGTGACAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGAACTTGCATCAAAAAGGTCTAATTCTCCTATCGTTCCGGTCCGTAATGAGGGAACTTCAGGCTTTCGAAATGAAACTAGTGGAGGTGTGGTTCATAATGTTAGTTCAGTTGCTCCCTCACACATTTCTAGCACTGCTGTTGTTGGTCGAATGGAAATTCCTCCATGTGTTCAGAATGGACATGATGCTGTGAAGATTTAA 1110 0.4441 MANFSSFSSSSSTPPPPPSFSYISAPSSSSLFDDDSSEDSCSICLESFSVHDPSTVTCCRHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLVAVEAEKCLRSRNNYSSSLTNSSVPFERFNGDHDASRSDDIDFDEQIMQHLYAAASRARFVQRQRREGSSGAGPSEVSVVQPTLTTSPAGSSSLTTGLPSTADLHPVVARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVRNEGTSGFRNETSGGVVHNVSSVAPSHISSTAVVGRMEIPPCVQNGHDAVKI* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4181 369 MobiDBLite consensus disorder prediction 158 218 - -
Psa1g4181 369 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Psa1g4181 369 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 2 325 - -
Psa1g4181 369 MobiDBLite consensus disorder prediction 164 196 - -
Psa1g4181 369 SUPERFAMILY RING/U-box 36 88 - -
Psa1g4181 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Psa1g4181 369 SMART ring_2 41 81 IPR001841 -
Psa1g4181 369 Pfam Ring finger domain 39 81 IPR001841 -
Psa1g4181 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 2 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4181 Psa-Chr1 334268495 334272066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4181 35 89 C3H Transcription Factor Family AT4G00335 47.273 7.14e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4181 K19043 - gmx:100785684 385.185