Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4150 ATGATGCAGCCTGGACATGGTATGGCTCCTCCAAGCTTGGGACAACAGCCACCGCAGCAATACCAGCAGCCTCCACCGCAGCAACCGTACGTCATGATGCAACCTCAAGCGCCGCAAGCCTTGTGGGCCCAATCCGCCCAGCCTGCTCAGCAGCCAGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGAGATTTACAGTACTGGATGGACGAAAACTACCTCTACACCTGCTTCGGTAATACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCGGAAGGTTATGGTTTTATTGAGTTTAATACCCGTGCTAATGCTGAGAGAGTGCTTCAGACATACAACGGAACTATTATGCCGAATGGTGGCCAGAGCTTTAGATTGAATTGGGCTACTTTCAGTGCTGGGGAGAGGTCGTCTAGGCAGGATGAAGGTCCTGATTATACCATTTTTGTCGGCGATTTGGCTGCAGATGTTAGTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGTTTTAACTCTGTCAAGGGGGCGAAAGTTGTGATTGATAGACTCACTGGCAGGTCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCCACAAGACCCATGAGGATTGGACCAGCCACAAATAAGAACCCGGCTGCCACCACTCAGCCCAAAGCCTCTTATCAGAACCCTCTAGGAGGACAAAGCGAGAATGATCCTAACAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTGTTCAGCCAATATGGTGAACTAGTTCATGTGAAGATTCCATCTGGCAAGCGATGTGGGTTTGTCCAATTTTCTGACAGGAGCTGTGCAGAAGAAGCAATTAGAGTTTTAAATGGAACTCTATTGGGTGGACAAAATGTCCGCCTTTCATGGGGTCGTACTCCCTCAAACAAACAGACTCCACAAGATCCAAACCAGTGGAGTGCTGCTGCAGGTGGTGGATATTATGGTTATCCTCAGGGTGGTTATGAAAATTATGGTTATGCTGCTGCTCCTGCTGGACAAGATCCCAATGTGTATGGAAGTTATCCGGGTTATGCTGGTTACCAACACCCCCAGCAGCAACAACAGCAAATGGGATATAGCTAA 1206 0.4793 MMQPGHGMAPPSLGQQPPQQYQQPPPQQPYVMMQPQAPQALWAQSAQPAQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRANAERVLQTYNGTIMPNGGQSFRLNWATFSAGERSSRQDEGPDYTIFVGDLAADVSDYLLQETFRARFNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYQNPLGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTPQDPNQWSAAAGGGYYGYPQGGYENYGYAAAPAGQDPNVYGSYPGYAGYQHPQQQQQQMGYS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4150 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 397 - -
Psa1g4150 401 SUPERFAMILY RNA-binding domain, RBD 145 239 IPR035979 GO:0003676
Psa1g4150 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 139 IPR000504 GO:0003723
Psa1g4150 401 CDD RRM3_NGR1_NAM8_like 260 331 - -
Psa1g4150 401 Gene3D - 242 341 IPR012677 -
Psa1g4150 401 SUPERFAMILY RNA-binding domain, RBD 21 141 IPR035979 GO:0003676
Psa1g4150 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Psa1g4150 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Psa1g4150 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 126 IPR000504 GO:0003723
Psa1g4150 401 MobiDBLite consensus disorder prediction 233 256 - -
Psa1g4150 401 SMART rrm1_1 60 135 IPR000504 GO:0003723
Psa1g4150 401 SMART rrm1_1 155 229 IPR000504 GO:0003723
Psa1g4150 401 SMART rrm1_1 262 329 IPR000504 GO:0003723
Psa1g4150 401 CDD RRM2_SECp43_like 153 232 - -
Psa1g4150 401 MobiDBLite consensus disorder prediction 232 256 - -
Psa1g4150 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Psa1g4150 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 397 - -
Psa1g4150 401 Gene3D - 143 241 IPR012677 -
Psa1g4150 401 MobiDBLite consensus disorder prediction 1 26 - -
Psa1g4150 401 Gene3D - 12 142 IPR012677 -
Psa1g4150 401 CDD RRM1_SECp43_like 60 140 - -
Psa1g4150 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Psa1g4150 401 SUPERFAMILY RNA-binding domain, RBD 247 361 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4150 Psa-Chr1 333065845 333074254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4150 155 326 Eukaryotic Initiation Factors Gene Family AT4G34110 29.379 1.11e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4150 - - gmx:100801562 599.356