Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4137 ATGAGTGACTCAAAGTATGCAACCACTGCAAACAATGGCCAGTATGCATATGCAGATCAAATGAAACGAGAGACTGAGCTGGAATTCTCCCCGGAAGAAGAAGATATCGTTGTAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGAAGAATTCCTGGAAGAACAGCCGAAGATATTGAAAAGTATTGGAATTCAAAGTTCTCTTCATCAACTGCGTGTTAA 234 0.3932 MSDSKYATTANNGQYAYADQMKRETELEFSPEEEDIVVKMFRLVGKRWHLIAGRIPGRTAEDIEKYWNSKFSSSTAC* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4137 77 SUPERFAMILY Homeodomain-like 29 71 IPR009057 -
Psa1g4137 77 CDD SANT 28 68 IPR001005 -
Psa1g4137 77 ProSiteProfiles Myb-like domain profile. 29 71 IPR001005 -
Psa1g4137 77 SMART sant 25 73 IPR001005 -
Psa1g4137 77 Pfam Myb-like DNA-binding domain 28 69 IPR001005 -
Psa1g4137 77 Gene3D - 28 72 - -
Psa1g4137 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 75 IPR017930 -
Psa1g4137 77 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 74 - -
Psa1g4137 77 PANTHER MYB TRANSCRIPTION FACTOR 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4137 Psa-Chr1 332415497 332416690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4137 29 72 MYB Transcription Factor Family AT5G52600 47.727 5.45e-14 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa1g4137 Myb_DNA-binding 4.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4137 - - mtr:MTR_2g023100 142.124