Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4135 ATGTCTCATATAGCTGTTGAGAGAAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGTCCTTGACCCCTTGTTTCTATATTAAAAGGGGAGACCAAGCATCAATAATAGGGGGAGTTATAGAATTCATCAATGAATTGCACCAAGTTCTTCAATCTTTGGAATCTCAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCTAATCCAAGTCCAAAAACACTGCAACCAACTTTTCATCAATTTGATATCTCCTCTGGAGGAATTGAGACTAACAATACTTTCAAGGAGCTAGGAGCAAGCTGCAATTCTTCAGTTGCAGATGTAGAAGTGAAAATCTCAGGTCCTAATGTGATTTTGAGAGTGATATCTCAAAGAATTCCAGGTCAAGTTTCAAGGATTATAACCGTTTTAGAAAGTTTTTCTTTTGAAGTTCTTCATCTTAATATCAGTAGCATGGAAGAGACTGTTCTATACCAATTTGTTGTCAAGATAGAACTGGGATGTCAGCTAAGTTTGGAGGAACTAGCTATGAAAGTTCAACAAAGCTTTTGTTCAGAGGCTATGAAGTTGATTGCTGTGTGA 588 0.3707 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQSLESQKRRKSLSPSPNPSPKTLQPTFHQFDISSGGIETNNTFKELGASCNSSVADVEVKISGPNVILRVISQRIPGQVSRIITVLESFSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMKVQQSFCSEAMKLIAV* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4135 195 Gene3D - 1 64 IPR036638 GO:0046983
Psa1g4135 195 PANTHER TRANSCRIPTION FACTOR MUTE 1 191 - -
Psa1g4135 195 PANTHER TRANSCRIPTION FACTOR FAMA 1 191 IPR044283 GO:0003700|GO:0010052
Psa1g4135 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 70 IPR036638 GO:0046983
Psa1g4135 195 SMART finulus 4 55 IPR011598 GO:0046983
Psa1g4135 195 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Psa1g4135 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4135 Psa-Chr1 332248051 332249363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4135 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.824 4.72e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g4135 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4135 - - mtr:MTR_2g022280 348.206