Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4134 ATGAAAATAACCTCCAATATCTTGTTGGTCTTCTTGGTGACACCCATTTTCCTCCTACACATGATTAGTTGTGAGAATGATGTGGTGAAGACAACATTAATACAGTTCCTGTCACAGCTCAAAGGCCAGCAGAATAACAATCCTACTTTGGATTGGAAACCAGACACTGATCCCTGCAAGGATCACTGGAATGGTGTATACTGTGATGCTCTAATGTCTATAAAGAGGTTGGATCTTTACAGGTTCAATTTGTCTGGAACTCTCGATGTCGCCTTGCTTTGTAACGCGCAGCCTCTAGCTGCATCTCTCACCTTTCTTAGTCTTGACGACAACAACATTAGCGGCGGAATATCATCCGAGATCGGAAACTGCAAACAACTCACTCGTCTTCACGTAAGTGGAAACCACCTCGCTGGAAACCTTCCTGCTTCGCTCGCCATGTTAAACAATTTGAAAAGATTAGACCTTTCCAACAACAAGTTTTCGGGGCCGTTGCCAAACCTGGCTAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAATAACCTTGGCGGAAATATCCCGGCTTTTTATTTCCCCAATTTTGATCATTTCAATGTCTCTTTTAACAATTTCAGTGGCCAAATTCCAGATGTACAAGGTCATTTCTTTGCAGACAGTTTTCTTGGTAATCCAGAACTATGTGGATATCCACTACAGAAAAATTGTACTAGTCAGACTCTGAGTAGTACTGTTAGTAAAACATCAGAAGAAGAAGAATCAAAAGCTCCTTCCAAAGAACAGATTTTAATATATTCAGGTTATGCTGCATTAGGTGTTATCATAATCCTTTTTGTATTCTTGAAGATATGCAGAAGCAAGAAGAGGGGAAAGAAAGTTAAAGCATCATCAAACGATGATATCGAAAAACCGAGCTATGTTTCGAGTGAATCCAAAGCAGAAGATGCAAGCAAATCAGGATTTTCAATGTCCTCTGAATGTGGAATGGTCTCACAACAATCACTTATTGTTCTTTCAAAGCCAGTGGTGAATGAGTTGAAACTGGAGGAGTTGCTGAGAGCACCTGCTGAAATGATTGGGAGAGGAAACAATGGAAGTCTTTATAAAGTGATGCTAACAAATGGAATAGTAGTGGTTGTAAAAAGGATTAAGGATTGGAGTATTTCTAGTGATGAATTCAAGCAAAGAATGCAACTGTTGAATCAAGCAAAGCATTCTCATGTTCTGCCACCTCTTGCTTTCTATTGTAACAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCATAATGGAAGTTTGTTCAAGCTTTTACATGGCACTTCAAAAAAAACCTTTGATTGGAGCAGCAGGCTTGGAATTGCATCAACAATAGCAGAAGCATTAGCTTTCATGCATCAAGAGCTTGGTCAACAAGGTATCATTCATGGAAACATGAAATCCTCAAACATTTTGATAAACAAAAACATGGAGCCATGTATAAGTGAATATGGCACCACGCCTAAGGATGATCAACAAAGTTCAACTTTGGCATTCAAGGAAGATGTTTATGGTTTTGGTGTTATTCTTCTTGAACTTCTAACTGGAAAATTGGTGAAGAATAATGGTATTGACTTGACTGATTGGGTTCAGTCAGTAGTGAGAGAAGAATGGACAGGTGAAGTGTTTGATAGGTGTTTGTTGGCAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTTAATACTTCATTAGAGGCTAGGCCAAGCATGAACCAAGTTAAGGATATCAATATGGGAATTAAATTCCTTACCTACTTTAGCCATCCGGTAGATATTGTTGTTGTTTTGTAG 1854 0.39 MKITSNILLVFLVTPIFLLHMISCENDVVKTTLIQFLSQLKGQQNNNPTLDWKPDTDPCKDHWNGVYCDALMSIKRLDLYRFNLSGTLDVALLCNAQPLAASLTFLSLDDNNISGGISSEIGNCKQLTRLHVSGNHLAGNLPASLAMLNNLKRLDLSNNKFSGPLPNLARISGLNMFLAQNNNLGGNIPAFYFPNFDHFNVSFNNFSGQIPDVQGHFFADSFLGNPELCGYPLQKNCTSQTLSSTVSKTSEEEESKAPSKEQILIYSGYAALGVIIILFVFLKICRSKKRGKKVKASSNDDIEKPSYVSSESKAEDASKSGFSMSSECGMVSQQSLIVLSKPVVNELKLEELLRAPAEMIGRGNNGSLYKVMLTNGIVVVVKRIKDWSISSDEFKQRMQLLNQAKHSHVLPPLAFYCNKQEKLLVYEYQHNGSLFKLLHGTSKKTFDWSSRLGIASTIAEALAFMHQELGQQGIIHGNMKSSNILINKNMEPCISEYGTTPKDDQQSSTLAFKEDVYGFGVILLELLTGKLVKNNGIDLTDWVQSVVREEWTGEVFDRCLLAEYASEERMVNMLQVAIRCVNTSLEARPSMNQVKDINMGIKFLTYFSHPVDIVVVL* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4134 617 SUPERFAMILY Protein kinase-like (PK-like) 358 596 IPR011009 -
Psa1g4134 617 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Psa1g4134 617 Gene3D Transferase(Phosphotransferase) domain 1 508 601 - -
Psa1g4134 617 SUPERFAMILY L domain-like 55 215 - -
Psa1g4134 617 Pfam Protein kinase domain 358 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4134 617 Gene3D Ribonuclease Inhibitor 29 193 IPR032675 -
Psa1g4134 617 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
Psa1g4134 617 Gene3D Phosphorylase Kinase; domain 1 321 428 - -
Psa1g4134 617 Gene3D Transferase(Phosphotransferase) domain 1 430 507 - -
Psa1g4134 617 Gene3D Ribonuclease Inhibitor 194 240 IPR032675 -
Psa1g4134 617 PANTHER OS05G0588300 PROTEIN 10 595 - -
Psa1g4134 617 ProSiteProfiles Protein kinase domain profile. 354 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4134 617 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Psa1g4134 617 PANTHER OS10G0387400 PROTEIN 10 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4134 Psa-Chr1 332082966 332085759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4134 1 599 Receptor kinase-like Gene Family AT3G08680 33.646 7.55e-88 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa1g4134 Pkinase 3.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4134 - - gmx:100813796 794.267