Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4133 ATGTCGACGGTGTACGTGTTGGAACCGCCGACAAAGGGAAAAGTGGTCGTGAACACAACGCGCGGCCCTATCGATATCGAGCTATGGCCTAAAGAAGCTCCCAAAGCCGTAAGGAACTTCGTTCAACTCTGCCTCGAAGGTTATTACGACAACACCATCTTCCACCGTGTCATCAAAGACTTCCTCGTTCAGTGTGGCGACCCCACTGGAACTGGCACCGGAGGTGAAAGTATTTATGGAGATGTTTTTGCTGATGAGTTTCATTCGCGTATTAAATTCAAGCATAGAGGTTTGGTGGCAATGGCTAATTCTGGAACCCCTAATTCTAATGGGAGTCAGTTTTTCATTACTCTTGACCGGTGTGATTGGCTTGATAGAAAGCATACCATTTTCGGAAAGGTGACAGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTTGAGACTGATAAGAGTGACCGGCCTTTAGATCCAGCGCCAAAGATATTATCTGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAACCTGAGACTAAAGCTACACGTGATACAGATGGTAAAGATGCAAAGAGGAAAGGTGTAAAAAATTTGAACTTGCTTTCATTTGGGGAAGAAACTGAAGAAGAGGAAAAAGAATTGACATTGGTGAAGAAAAAGATTGTGAGCAGTCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGATGAAAATGCTAATAATGAATTGAGTTCATCTGACAGTAAACTAAAAAGGGATCTGCAGTTATCTGTAAGGGATGCACTTATTTCAAAAAAAGAAGAGCATCGGAAAGATTCAGGAGCTGATAAATTGTCTCATGTTGATTCCAGTGATGACGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAACTGGATGATCTCCCACCTAAACCAAAGATGCAAAATGGAAGGTCGAGGTCCAGTCCAGAGAAACATTCTGTGTCAAGAGCTAGGTCCAATTCTGTAAGTGCCGATGAGGAGGATCAACCAAGAGTGGAAAAATTGTCCATGAAGAAGAAGGGAATAGGATCCGAAGCAAGAGCTGAACGAATGGCTAATGCAGATACAGATATGCAGCTTTTGAATGAAGCCGAGAGAGGACGACATTTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAAACCACTAAATTAGCAAAAGAGACACCCACAACTGTTGAATCTAAACATGCTAGCGGTGAGGAATTATCTGACTGGAGAAGTGTTAGCTTAAAATTTTCCCCCGCAGCTGGCAAGGACCGCATGGCTCGCACCGAGGATCCAAATGATTATGTTGTGCTTGATCCTCTTTTGGAAAAGGGGAAAGAGAAGTTCAATAAGATGCAAGCCAAACAAAAGAGACGTGAACGAGAATGGGCTGGAAAATCCCTTACTTGA 1500 0.4267 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRVIKDFLVQCGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKSDRPLDPAPKILSVEVLWNPFEDIVPRTLQKPETKATRDTDGKDAKRKGVKNLNLLSFGEETEEEEKELTLVKKKIVSSHDVLNDPRLLKDENANNELSSSDSKLKRDLQLSVRDALISKKEEHRKDSGADKLSHVDSSDDDEADFDSRMRMQILKKRKELDDLPPKPKMQNGRSRSSPEKHSVSRARSNSVSADEEDQPRVEKLSMKKKGIGSEARAERMANADTDMQLLNEAERGRHLQKQKKRRLQGREDEVLAKLEKFKTTKLAKETPTTVESKHASGEELSDWRSVSLKFSPAAGKDRMARTEDPNDYVVLDPLLEKGKEKFNKMQAKQKRREREWAGKSLT* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4133 499 Gene3D - 2 183 IPR029000 -
Psa1g4133 499 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 203 IPR044666 -
Psa1g4133 499 MobiDBLite consensus disorder prediction 420 437 - -
Psa1g4133 499 CDD cyclophilin_CeCYP16-like 8 180 - -
Psa1g4133 499 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 MobiDBLite consensus disorder prediction 476 499 - -
Psa1g4133 499 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 MobiDBLite consensus disorder prediction 272 404 - -
Psa1g4133 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Psa1g4133 499 MobiDBLite consensus disorder prediction 343 374 - -
Psa1g4133 499 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 203 - -
Psa1g4133 499 SUPERFAMILY Cyclophilin-like 14 185 IPR029000 -
Psa1g4133 499 MobiDBLite consensus disorder prediction 272 335 - -
Psa1g4133 499 MobiDBLite consensus disorder prediction 420 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4133 Psa-Chr1 332073439 332082610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4133 9 173 U-box Gene Family AT5G67530 47.879 3.30e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4133 K12737 - gmx:100793148 761.911