Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4105 ATGTCTTCATCTTCATCTTCTCCTCTTAGCGGAGTTGTTGATAACAATAACTCTTCAAACCCGTCCGAGATGAGTCTAAAAGCACCTATGGTGAGACCTTATAGTCGATCGAAAATGCCCCGACTTCGTTGGACACCATATCTTCATCGTTGCTTTCTGCATGCAGTTCACAAGCTTGAAAAAGAAGAAAGAGGGACTACACCAAAGTTAATTTTACAACTAATGAATGTTAAGGGACTTACTATATCTCATGTGAAAAGCCACCTTCAGATGTATAGGAGCATGAGACATGAGGAAATGAGTCAAGAAGCAAAGAAGAATGTTATGGCAGCAAATTTATTAGCTTCCAGAATGATCTCATCCTCATCTCTTGTTCCAAGATTCCTCCAAACTCTTGAGAACGGTTATGAACAAGAGTCTTACAATGGAAATCAAGGTAATAAATCAGTTGTAATTTGTAACAGCGATGAACAGAAGAAGCACACTTACATCATCTTCGACGGTATTCTCAGCACTGTCCATGCAAACAAAAGGGACCAACGAGGATTCAAAGAAATAACCGCTAGAGGAAAGGAAGTGAGTGAAAGAGAGACAGATGATTTGTGTCTTGAGCTCACTCTCACTTGA 627 0.3987 MSSSSSSPLSGVVDNNNSSNPSEMSLKAPMVRPYSRSKMPRLRWTPYLHRCFLHAVHKLEKEERGTTPKLILQLMNVKGLTISHVKSHLQMYRSMRHEEMSQEAKKNVMAANLLASRMISSSSLVPRFLQTLENGYEQESYNGNQGNKSVVICNSDEQKKHTYIIFDGILSTVHANKRDQRGFKEITARGKEVSERETDDLCLELTLT* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4105 208 SUPERFAMILY Homeodomain-like 38 95 IPR009057 -
Psa1g4105 208 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g4105 208 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Psa1g4105 208 MobiDBLite consensus disorder prediction 1 32 - -
Psa1g4105 208 Gene3D - 35 98 - -
Psa1g4105 208 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 14 149 IPR044848 GO:0003700
Psa1g4105 208 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 94 IPR006447 GO:0003677
Psa1g4105 208 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 14 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4105 Psa-Chr1 330815840 330817704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4105 31 96 G2-like Transcription Factor Family AT1G14600 68.182 4.53e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g4105 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4105 - - gmx:100798980 203.756