Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4093 ATGGCCTGGACTAGAGGTGGAATCATCGGCCGGGGCTCAACCGCCACTGTCTACCTCGCGGAGCATCGCTATTCGGACCAAGTGTTTGCTGTGAAATCTACGGAGCTTCACCGCTCGGAGTTTCTGAAGAAAGAACAAGAGATTCTCTCGAAGGTTAAGTGTCCACAAATTGTTGACTACCGAGGTTGTGATGTCACGTTTGAAAACGGTGTTCATTTGTTTAATTTGTTTATGGAGTATGCGTCTAAGGGAACACTAGCTGATGCGGTTCGGAATGGAAATGGAATGGAAGAAGCTTTGGTGGGATTCTACGCGCGACAAATTCTACTTGGACTTAATTACCTTCATTCGAATGGTATAGTGCATTGTGATTTGAAGGGACAGAATGTGTTGTTGATGGAACAAGGTGTGAAGATTGCTGATTTTGGTTGTGCTCGGAGGGTGGAGGAGGAGTTGGTGATTTCTGGTTCACCGGCTTTCATGGCTCCGGAGGTGGCGCGTGGGGAGGAACAGGGGTTTCCTGCGGATGTATGGGCTTTGGGATGTACTGTGTTGGAGATGATCACAGGGAAAATGCCGTGGCAGGGTGTTTCTGATCCGGCCGCGGTTTTGTATCGGGTTGGATTCTCCGGTGATGTGCCGGAGATTCCTAATTTTGTGTCGGAACAGGGGAGGAATTTTTTGAGGAAGTGTTTGACGAGAGATCCAAATGAGAGGTGGTCGGTGGTTGAGCTTCTCGGACATGAGTTTGTTGGGAAGTTTAAGGAATCTGTGTCTGATTCGGAAACACCGACGACTGTGTTGGAAGGAGGTTTTTGGGATTGGGACTCTTTGGAAACAACTCATGATGTAGGTTCCACGTCTGATTGTTGTTCCTCGAATTCTTCGAGTCATTCTTCCAGTCCACGAGTCAGAATTCTAGGATTGTGTGCAAATGAGACCGTTTGGGAATTTGATGATGATGATGATGAATGGATCACTGTGAGAAGCAATGGACAGGATTTGGATGCAATGTCTTTTGAAAAAATGGAAGAGTATGAACCAGACATTGTTCTTGAATTTCGTGATCATCTACAATTGTGGCTGTTATGTTAG 1095 0.4639 MAWTRGGIIGRGSTATVYLAEHRYSDQVFAVKSTELHRSEFLKKEQEILSKVKCPQIVDYRGCDVTFENGVHLFNLFMEYASKGTLADAVRNGNGMEEALVGFYARQILLGLNYLHSNGIVHCDLKGQNVLLMEQGVKIADFGCARRVEEELVISGSPAFMAPEVARGEEQGFPADVWALGCTVLEMITGKMPWQGVSDPAAVLYRVGFSGDVPEIPNFVSEQGRNFLRKCLTRDPNERWSVVELLGHEFVGKFKESVSDSETPTTVLEGGFWDWDSLETTHDVGSTSDCCSSNSSSHSSSPRVRILGLCANETVWEFDDDDDEWITVRSNGQDLDAMSFEKMEEYEPDIVLEFRDHLQLWLLC* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4093 364 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4093 364 Gene3D Transferase(Phosphotransferase) domain 1 2 300 - -
Psa1g4093 364 Pfam Protein kinase domain 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4093 364 PANTHER MAP KINASE KINASE KINASE 1 341 - -
Psa1g4093 364 CDD STKc_MAPKKK 3 251 - -
Psa1g4093 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Psa1g4093 364 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4093 364 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Psa1g4093 364 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 341 - -
Psa1g4093 364 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4093 Psa-Chr1 330271214 330272403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4093 3 329 MAP Kinase Kinase Kinase AT5G55090 48.974 8.63e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa1g4093 Pkinase 5.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4093 K20716 - gmx:100802174 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4093 1 330271214 330272403 Psa1g4093 1 330271214 330272403 ECH
Psa1g4093 1 330271214 330272403 Psa7g4658 7 401616366 401618331 ECH
Psa5g6018 5 516734900 516736347 Psa1g4093 1 330271214 330272403 ECH