Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4089 ATGGACAAAGGTTGGGGACTTGCTCTTGACACTTCTTCTTCTTCCTCTCAAATTCCAATATCTCACTCTTTTTTGCCTTCCAAACACAACAACACCAACGATAGAATGTTTCCTATTTTAGGATTCCCAGTCAACCTCACCCGCAACGCCAACGCTGAAGACAGCGGTGATCGGAAAATAACCGGCGAAGTCGATTTCTTCTCCGAAAGAAACAAACCATCGCCTTCAGCTTCACACGATCATCAACATGTTGTTAAACATAATAACATCAAAAAGGAGATTGTTTCAACCGATGTAAAACCTTCAACTTCCAATATTCACGTTAATACTGGTTTACAACTTGCGAACACCGGGAGTGATCAATCTGTTGTGGATGATGGAGTTTCATCCGATGCCAAGAACACGGAGCTTGCACAATTGCAAATGGAGCTTCAACGGATGAATTCAGAGAACAAAAAACTGAAAGAGATGCTCAATCATGTTACCGGTAACTACACCGCTTTGCAGATGCAGCTCATGGCATTAATGCAAAAGAATCACCAAACAGAAAATGAGGTTGTTAATGCAAAAGCTGAAGAGAAAAACCAAGGTGTTGGTGGAGGAATAGTACCAAGGCAGTTTCTTGAGATAGGGACTAATGGAACAGCTGAAGTTGATGATAGAGTATCCAATTCTTCATCGGATGAAAGAACAAGATCGAACACGCCTCAGAATAGTCTTATTGAAGCTGGAAATAGAGATCAAATAAGAAATAACAATGGTAAAAATGGTAGAGAAGATAGTCCTGATTCAGAATCACAAGGTTGGGGTCCTAATAAGGTTCAGAAAATACTCAACTCTTCCAATGTTGCTGAACAATCTGCTACAGAAGCTACAATGAGAAAAGCTCGCGTCTCCGTTCGTGCTAGATCAGAAGCTTCAATGATTAGTGATGGATGCCAATGGAGAAAATATGGTCAAAAAATGGCGAAAGGAAATCCATGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGACAAAACAATATTGGTAACAACATATGAAGGAACACATAACCATCCACTTCCACCAGCAGCTATGGCAATGGCCTCAACAACCTCAGCAGCTGCAAGCATGTTGCTATCAGGTTCAATGTCAAGTGCAGATGGAATAATGACACCAAATTTATTAGCAAGAGCTATTCTTCCTTGTTCTACAAGCATGGCAACACTTTCAGCTTCAGCGCCATTCCCAACTGTTACATTGGATCTAACACAAAACTCAAACCCAATCCCAAATCCAAATCCATTGCAGCAATTTCAAAGACCTCATCATGCACCATTTCAAGTGCCTAATTTCTTTCCAGGACAACCTCAGAATTTTCAACAAGCAGCAGCGTCGCTTTATAATCAATCTAAATTCTCTGGTCTTCAATTGTCTCAAGAAGTTGGTTCTTCGCATTTAACAACTACACAAGCTCCAACGCTCCAACAACAACAGCAACAATCTTCCTTAGCTGATTCTGTCAGCGCCGCCACCGCTGCTATCACGGCCGATCCTAATTTCACCGCTGTTCTCGCCGCCGCTATCTCCTCCATCATCGGTGGTGGTCATGGAAACAACAGCAGCAACAACAATAGCAGAAGTACAGTTAGCAACTTTTCAGGAAACTAA 1695 0.4206 MDKGWGLALDTSSSSSQIPISHSFLPSKHNNTNDRMFPILGFPVNLTRNANAEDSGDRKITGEVDFFSERNKPSPSASHDHQHVVKHNNIKKEIVSTDVKPSTSNIHVNTGLQLANTGSDQSVVDDGVSSDAKNTELAQLQMELQRMNSENKKLKEMLNHVTGNYTALQMQLMALMQKNHQTENEVVNAKAEEKNQGVGGGIVPRQFLEIGTNGTAEVDDRVSNSSSDERTRSNTPQNSLIEAGNRDQIRNNNGKNGREDSPDSESQGWGPNKVQKILNSSNVAEQSATEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPIPNPNPLQQFQRPHHAPFQVPNFFPGQPQNFQQAAASLYNQSKFSGLQLSQEVGSSHLTTTQAPTLQQQQQQSSLADSVSAATAAITADPNFTAVLAAAISSIIGGGHGNNSSNNNSRSTVSNFSGN* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4089 564 SUPERFAMILY WRKY DNA-binding domain 302 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g4089 564 MobiDBLite consensus disorder prediction 228 251 - -
Psa1g4089 564 MobiDBLite consensus disorder prediction 210 272 - -
Psa1g4089 564 Coils Coil 130 192 - -
Psa1g4089 564 PANTHER WRKY TRANSCRIPTION FACTOR 6 35 554 - -
Psa1g4089 564 Pfam WRKY DNA -binding domain 311 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g4089 564 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 554 IPR044810 GO:0003700
Psa1g4089 564 SMART WRKY_cls 309 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g4089 564 ProSiteProfiles WRKY domain profile. 304 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g4089 564 Gene3D WRKY domain 294 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4089 Psa-Chr1 330180323 330183676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4089 1 548 WRKY Transcription Factor Family AT1G62300 50.746 1.45e-149 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa1g4089 WRKY 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4089 - - gmx:100802124 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4089 1 330180323 330183676 Psa1g4089 1 330180323 330183676 ECH
Psa5g4053 5 320023329 320025148 Psa1g4089 1 330180323 330183676 ECH
Psa5g6015 5 516446279 516449131 Psa1g4089 1 330180323 330183676 ECH