Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4086 ATGGCCACTTTAACTAATTTTATTAATATTCTCCTAGTTCTTATCTTATCATGTTTAATTCTACCTACATTAGGTAATTCAAATTCAAAAAAATATCATAACAGTGATTTATTAGATAATACTCCAACCTACAACATTCCAACACAAAACAATGTTGCTGTCATGAACACAATTGATTCATGCTGGCGAACCAATTCAAATTGGGCATCAAACCGCCAATCATTGGCCGACTGCGCGGTCGGATTCGGCAAAGACGCGATCGGAGGAAAATACGGTGACATATATGAAGTCACCGATCCTTCCGACGATCCAATAAACCCGAAACATGGCACACTACGCTTCGGCGCAATCCAAACTGAACCACTTTGGATAATATTTGCAAATGACATGGTAATCAAGCTGAAAAACGAGCTCATTGTGAATAGTTACAAAACAATTGATGGAAGAGGTGTTAAAGTTGAAATTGGAAATAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTGATTGTTCATGGAATTAGTATTCATGATTGTAAACCGGGTTTGGCGGGTATGGTTAGAAGTAGTAATGAACATGTTGGATATCGCCAAGGGTGCGATGGTGATGGAATTAGTGTTTTCGATTCTTCGAATATTTGGATCGATCATTGCTTTTTGGCGAGATGCGCGGATGGACTTACCGATGTTACTCATGCTTCAAGTCTTGTTACTATCTCAAATAATTACTTTACTCAACATGATAAAGTGATGTTGCTTGGACACAATGATGATTACAGTGCTGATAGAGTAATGAAAGTGACAGTAGCTTTCAACCATTTTGGCAGTGCTCTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCTCATGTTGTAAACAACCGATATGATGAGTGGCTCATGTATGCTATTGGGGGTAGTGCTGACCCTATCATTTTCAGTCAAGGAAACTACTTCATTGCTTCCAAAAATTCGGATGCAAAACAGGTTACGAAGAGAGAAACGGATGGAGAATGGAGTAATTGGAAATGGAGGAGTTATGGTGATGAATTCTTAAATGGTGCTTATTTTGTACCATCTGGTTATGGAAGTTGTGCACCATTATATTCATCATCTCAAAATTTTGTTGCTGCTAAAGCTTCAATGGTGCCTTTGTTAACACTCAATGCAGGACCTCTTGATTGTGTTGTTAACAAACCATGTTAA 1212 0.3804 MATLTNFINILLVLILSCLILPTLGNSNSKKYHNSDLLDNTPTYNIPTQNNVAVMNTIDSCWRTNSNWASNRQSLADCAVGFGKDAIGGKYGDIYEVTDPSDDPINPKHGTLRFGAIQTEPLWIIFANDMVIKLKNELIVNSYKTIDGRGVKVEIGNNGPCITIQGVSHVIVHGISIHDCKPGLAGMVRSSNEHVGYRQGCDGDGISVFDSSNIWIDHCFLARCADGLTDVTHASSLVTISNNYFTQHDKVMLLGHNDDYSADRVMKVTVAFNHFGSALIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPIIFSQGNYFIASKNSDAKQVTKRETDGEWSNWKWRSYGDEFLNGAYFVPSGYGSCAPLYSSSQNFVAAKASMVPLLTLNAGPLDCVVNKPC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4086 403 PANTHER PECTATE LYASE 18-RELATED 27 402 IPR045032 GO:0030570
Psa1g4086 403 SUPERFAMILY Pectin lyase-like 55 394 IPR011050 -
Psa1g4086 403 Gene3D - 55 396 IPR012334 -
Psa1g4086 403 Pfam Pectate lyase 135 321 IPR002022 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Psa1g4086 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Psa1g4086 403 PANTHER PECTATE LYASE 27 402 - -
Psa1g4086 403 SMART amb_all 129 327 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4086 Psa-Chr1 330079047 330080559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4086 44 403 Polysaccharide Lyase AT1G11920 68.144 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4086 K01728 - gmx:100803229 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4086 1 330079047 330080559 Psa1g4086 1 330079047 330080559 ECH