Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4080 ATGGAGCATTTACTTCTATCAGCTCGAGCCCTGCGTTCGCGTTTCCGTTCACTTCCTTCTTTCCAAACCCTAAATTCTCAATTCTCACACCGCCTTCACTCTTCCCCCTCTCCAAAAGTAGAATCTGCATCTGCGGGATCCACCTTCTCTGGTGTTTCCAGCTCGAAAGTTTTGTGTGGGGAGTCGGGACGGATGCTTCCTGCTGTTTTGGCTGGTTTATTTGGAATTGGAATGGTGGAAACTGCGTATGCGGATAAAGCTAATGAAGATGTGCAAGAGATTGCTAAAAAAGAACGGGAGAGAATTCAGAACTTGCTTACAACTAGGGGAATTCGACAAGGTTCTTGTCCTCGCTTCAATGTAGCTGTTAAAGGCCAGAAGGTCAGTATAAAGTTTCAAGTTCCTCCTGGTTGTGAAATTTCACAACTTATTGCAAACCTTACTGCACATCTTGGACTGAAATCTGAAGGCCACGGCGGTGGTTCAGATATGATTTTGCGTGCGTGGGACAGCACGGTTGCTTGGCAACTTACCCTTACTCATCCATCAAAGCAAAAGCATATTCAACAGAATGAGCCGTCTTCAACAGATACAAATGCACATGATAGAGATCTATGTATACTTATATTTCATTCTCTCATTGGCTCAGATAAAATTGAAATTGAATTTATGAAGCAAGGGAACTTGAGTCCCGAAGAGCTTGATGCTTTCATATCTGTTTTACAATTAGCTGGTAACAAGTTGGTAGAAAGAAATCCCGTGGAAAGAAAGCCATGGGAAGAGATCGAACAAGCACCATCTGTAGATAAAGCAATTTCTAGTCTTGAGGCCATGGGAGTAAGAACATATGGACTCAATGAACCCATAGGTACATCAAACAATGAAGTATCATGGGACAATATTGCTGGGTACGAGCATCAAAAACGGGTAATAGAAGATACAATACTATTGGCTTTGCACAGTCCTGAAGTATATGATGATATTGCTCGCGGGACTCGGCATAAGTTTGAGTCTAACAGGCCTCGAGCTGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACCTCTTGTGCCCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTTTATGTTCCACTTGAGGTAGTGATGTCTGAATTCTATGGTAAAAGTGAACGCCTTCTAGGGAAAGTGTTTTCACTAGCAAACAGTCTTCCCAATGGCGCTATTATATTTTTGGATGAGATTGATTCTTTTGCTGCTGCTCGAGATGGCGAAATGCATGAAGCTACGCGTAGATTATTGTCAGTATTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCTGCATTAATTAGTCGGTTTGATACTATGATCGCTTTTGGTTTACCTGATCATCATAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCAAAAACCGAACTTGATGAACTTGCACGAGCTACAGAAGATATGGCTGGGAGAGATATTAGAGATATTTGTCTGCAAGCAGAACGATCCTGGGCATCAAAGATTATTCGGGGACAAGTATCTAAAGATGAAGAACAAACTAACCTTCCACCTTTGCAAGAATACATAGCTTGTGCAACACATAGACGGGATTCGCTGCTTAGTGCTGCTGCAAATAGGAAGCCCCGACGTGCATCCCGCAACAAGATAATAAATGAGTAA 1731 0.4269 MEHLLLSARALRSRFRSLPSFQTLNSQFSHRLHSSPSPKVESASAGSTFSGVSSSKVLCGESGRMLPAVLAGLFGIGMVETAYADKANEDVQEIAKKERERIQNLLTTRGIRQGSCPRFNVAVKGQKVSIKFQVPPGCEISQLIANLTAHLGLKSEGHGGGSDMILRAWDSTVAWQLTLTHPSKQKHIQQNEPSSTDTNAHDRDLCILIFHSLIGSDKIEIEFMKQGNLSPEELDAFISVLQLAGNKLVERNPVERKPWEEIEQAPSVDKAISSLEAMGVRTYGLNEPIGTSNNEVSWDNIAGYEHQKRVIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSEFYGKSERLLGKVFSLANSLPNGAIIFLDEIDSFAAARDGEMHEATRRLLSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIAFGLPDHHNRQEIASKYAKHLSKTELDELARATEDMAGRDIRDICLQAERSWASKIIRGQVSKDEEQTNLPPLQEYIACATHRRDSLLSAAANRKPRRASRNKIINE* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4080 576 CDD AAA 337 473 - -
Psa1g4080 576 ProSitePatterns AAA-protein family signature. 445 464 IPR003960 GO:0005524|GO:0016887
Psa1g4080 576 Gene3D - 474 538 - -
Psa1g4080 576 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 73 559 - -
Psa1g4080 576 SMART AAA_5 340 475 IPR003593 -
Psa1g4080 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 519 IPR027417 -
Psa1g4080 576 Pfam ATPase family associated with various cellular activities (AAA) 344 472 IPR003959 GO:0005524|GO:0016887
Psa1g4080 576 Coils Coil 88 108 - -
Psa1g4080 576 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 73 559 - -
Psa1g4080 576 Gene3D - 293 473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4080 Psa-Chr1 329441525 329451633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4080 340 540 Calmodulin-binding Proteins AT3G56690 36.842 1.21e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4080 - - mtr:MTR_2g024440 918.302