Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4066 ATGTCAAAAGGAGCCATTGCTGGCATAGTTGTTGGAGGAGCTTTTGGGATTTTACTTCTGGCACTCATTCTATATGTTTTGTTCTATAGAAGAAAAAAAGTTGCTCAAGGAACACTTCTACCAGTCCCAGGTGCATCCGAAGATCAGTATAGTCAACTCCAACATGGTTGTGGAAGCAGCTTGGATAAGGCATCAGAATCAACTACCGTTGCTTCGCCGAGGTTGACAGGTATTACTGTTGATAAGTCAGTGGAGTTTTCATATGAGGAGTTAGCCAGAGCTACTGACGGTTTTAGCGCGGCGAATATAATTGGTCGAGGTGGCTTTGGATCTGTTTACTATGCCGAGCTTCGAAACGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTAGCTGAACTAAAGGTTCTGACACACGTTCATCACTTGAATTTGGTTCGGCTAATTGGATATTGCGTCGAGGGCTCCTTATTTTTGGTTTACGAATACATTGAGAATGGAAATTTAAGTCAACATTTGCGCGGCACAGGGAAGGATCCATTATCATGGCCAGGTAGAGTTCAAATTGCATTAGACTCGGCAAGAGGACTTGAATACATTCATGAGCACACAGTTCCTGTCTACATTCATAGAGATGTTAAATCAGCAAACATTTTGATAGACAAAAACTTTCGTGGAAAGGTTGCGGATTTTGGTTTGACAAAATTGACTGAATATGGCAGTTCCTCGTTACAAACACGCCTTGTCGGGACGTTTGGCTATATGCCTCCTGAATATGCACAATATGGCGAAGTTTCTCCGAAAGTTGATGTATATGCTTTTGGAGTTGTTTTGTTTGAGCTTATATCTGGGAAGCCGGCTATTGTGAAGACAAACGAGACCGAGAACGAGTCAAAGGGACTAGTTGCACTGTTTGAAGAAGTTATTGTTCTGCCAGACCCAAAAGAAGATCTTGGTAAACTTGTTGATCCTAGGCTTGGTGAAAATTACCCTATCGACTCAGTGTTTAAGATGTGTCAACTTGCGAAAGCATGTACACATGAAAATCCTCAACTGAGGCCAAGCATGAGATCAATTGTAGTTGCTCTAATGACACTTTCATCTGCAGCTGAGGATTGGGATGTTGGATCATTCTATGAAAACCAAGCATTAGTGCATTTAATGTCTGGGAGGTAG 1191 0.4165 MSKGAIAGIVVGGAFGILLLALILYVLFYRRKKVAQGTLLPVPGASEDQYSQLQHGCGSSLDKASESTTVASPRLTGITVDKSVEFSYEELARATDGFSAANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTGKDPLSWPGRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKVDVYAFGVVLFELISGKPAIVKTNETENESKGLVALFEEVIVLPDPKEDLGKLVDPRLGENYPIDSVFKMCQLAKACTHENPQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4066 396 ProSiteProfiles Protein kinase domain profile. 98 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4066 396 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 2 396 - -
Psa1g4066 396 SMART serkin_6 98 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4066 396 Pfam Protein tyrosine and serine/threonine kinase 101 367 IPR001245 GO:0004672|GO:0006468
Psa1g4066 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Psa1g4066 396 SUPERFAMILY Protein kinase-like (PK-like) 76 368 IPR011009 -
Psa1g4066 396 CDD STKc_IRAK 104 365 - -
Psa1g4066 396 Gene3D Phosphorylase Kinase; domain 1 79 168 - -
Psa1g4066 396 Gene3D Transferase(Phosphotransferase) domain 1 169 380 - -
Psa1g4066 396 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 396 IPR044812 GO:0019199|GO:0045087
Psa1g4066 396 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4066 Psa-Chr1 329008701 329010805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4066 4 396 Receptor kinase-like Gene Family AT3G21630 62.850 2.71e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa1g4066 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4066 - K13429 gmx:100802308 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4066 1 329008701 329010805 Psa1g4066 1 329008701 329010805 ECH