Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4058 ATGAGTCAGCTCGGTTTGTTATTGCAGGAGACTCGGGGTGAGTCAAGAACGATTCTCGGTTTGTTAAGGGAACAAATGGACGGTGTTGATGGAGTTCCTCGTAGGAGGCGTTCCTTCAAGGAACGGTTTGGATTCATCGGGATAGGTTGTTGCGGAGCCACACGGGGATTCCGTTCTTCTTCTTCTTCTTCTTCACCTCAATTACCTCAGCAACAAATTTCGGATACGGATCCGGTTCAGGATCCTAGCGTCTGTTTAGGCCCGAATCCAACTGCTTCGGGTTCGAGTTCGGGTAACATGAATCTTGCGGCGGCGTTAGCGGCGGAGCGACACCTCCGAAGACCGGCGGTGGAGAATATCGTCGGAGGGGGTAGGACTCCGGGGACACCGTGGAGAGTGTCGTTGATGAGGCTCCTAGAGGAGACGGAAAATGGTGACACGGTGGCGGCTAAGGCTGTGACAGAGGTAAAAGAAAGTGGTGTGGCGGGAAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAATAAAGGCGCGGCGTTTATTCCATGTGGACATACTTTTTGCAGAGTCTGCTCTAGGGAGCTGTGGCTGAACAGAGGCTCCTGTCCACTTTGTAACCGTTCGATTCTTGAGATTCTTGATATTTTCTAG 651 0.5207 MSQLGLLLQETRGESRTILGLLREQMDGVDGVPRRRRSFKERFGFIGIGCCGATRGFRSSSSSSSPQLPQQQISDTDPVQDPSVCLGPNPTASGSSSGNMNLAAALAAERHLRRPAVENIVGGGRTPGTPWRVSLMRLLEETENGDTVAAKAVTEVKESGVAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4058 216 MobiDBLite consensus disorder prediction 58 79 - -
Psa1g4058 216 CDD RING-HC 168 205 - -
Psa1g4058 216 SUPERFAMILY RING/U-box 158 213 - -
Psa1g4058 216 SMART ring_2 168 205 IPR001841 -
Psa1g4058 216 ProSiteProfiles Zinc finger RING-type profile. 168 206 IPR001841 -
Psa1g4058 216 MobiDBLite consensus disorder prediction 58 80 - -
Psa1g4058 216 Pfam Zinc finger, C3HC4 type (RING finger) 165 210 - -
Psa1g4058 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 215 IPR013083 -
Psa1g4058 216 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 216 - -
Psa1g4058 216 PANTHER OS01G0917900 PROTEIN 15 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4058 Psa-Chr1 328671111 328672646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4058 18 216 C3H Transcription Factor Family AT4G22250 50.990 6.67e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4058 - - gmx:100804959 246.899