Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g4058 | ATGAGTCAGCTCGGTTTGTTATTGCAGGAGACTCGGGGTGAGTCAAGAACGATTCTCGGTTTGTTAAGGGAACAAATGGACGGTGTTGATGGAGTTCCTCGTAGGAGGCGTTCCTTCAAGGAACGGTTTGGATTCATCGGGATAGGTTGTTGCGGAGCCACACGGGGATTCCGTTCTTCTTCTTCTTCTTCTTCACCTCAATTACCTCAGCAACAAATTTCGGATACGGATCCGGTTCAGGATCCTAGCGTCTGTTTAGGCCCGAATCCAACTGCTTCGGGTTCGAGTTCGGGTAACATGAATCTTGCGGCGGCGTTAGCGGCGGAGCGACACCTCCGAAGACCGGCGGTGGAGAATATCGTCGGAGGGGGTAGGACTCCGGGGACACCGTGGAGAGTGTCGTTGATGAGGCTCCTAGAGGAGACGGAAAATGGTGACACGGTGGCGGCTAAGGCTGTGACAGAGGTAAAAGAAAGTGGTGTGGCGGGAAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAATAAAGGCGCGGCGTTTATTCCATGTGGACATACTTTTTGCAGAGTCTGCTCTAGGGAGCTGTGGCTGAACAGAGGCTCCTGTCCACTTTGTAACCGTTCGATTCTTGAGATTCTTGATATTTTCTAG | 651 | 0.5207 | MSQLGLLLQETRGESRTILGLLREQMDGVDGVPRRRRSFKERFGFIGIGCCGATRGFRSSSSSSSPQLPQQQISDTDPVQDPSVCLGPNPTASGSSSGNMNLAAALAAERHLRRPAVENIVGGGRTPGTPWRVSLMRLLEETENGDTVAAKAVTEVKESGVAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g4058 | 216 | MobiDBLite | consensus disorder prediction | 58 | 79 | - | - | |
Psa1g4058 | 216 | CDD | RING-HC | 168 | 205 | - | - | |
Psa1g4058 | 216 | SUPERFAMILY | RING/U-box | 158 | 213 | - | - | |
Psa1g4058 | 216 | SMART | ring_2 | 168 | 205 | IPR001841 | - | |
Psa1g4058 | 216 | ProSiteProfiles | Zinc finger RING-type profile. | 168 | 206 | IPR001841 | - | |
Psa1g4058 | 216 | MobiDBLite | consensus disorder prediction | 58 | 80 | - | - | |
Psa1g4058 | 216 | Pfam | Zinc finger, C3HC4 type (RING finger) | 165 | 210 | - | - | |
Psa1g4058 | 216 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 215 | IPR013083 | - | |
Psa1g4058 | 216 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 15 | 216 | - | - | |
Psa1g4058 | 216 | PANTHER | OS01G0917900 PROTEIN | 15 | 216 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g4058 | Psa-Chr1 | 328671111 | 328672646 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g4058 | 18 | 216 | C3H Transcription Factor Family | AT4G22250 | 50.990 | 6.67e-58 | 180 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g4058 | - | - | gmx:100804959 | 246.899 |