Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4038 ATGGAGTATTCTCATGGTTTGATACATGGAAGTTCAGCCGCAACGTCTGGAGTTTCAGTAACAAATGCTAGCTTCTGCAAGAACAATACTTTAGATCCTACCTTAATCAATGGAAAGATTGTTATCTGCACAATTGAAAACTTCACTGACAAAAGAGAAGAAAAATCCATAATAGTAAAGCAAGGTGGTGGTGTTGGAATGATACTTATTGACCATAATGCCAAAGAAGCAGAGGCGGATATTATTGATGCACTTACAGTTAAGCTTCCAAACCTTGGGGTGAATGTTCTGCCCATGCAATTCACGCAAATAAAAGATCCTATGGAAATTGTAAAAATGGAAATCACAAATCCAACTGGAGCATATTTTCATGTTGAGGAGCTTGTTGAGGTTGCCAGGCTTCTTAGCTTGAGGTCTGCTGATGATGTACCGGCTGTTGAAGAAGTTATTGCTAGAGAAGCTGCAGTTTCTGGATTTGCTTTAATTGAGTACAGAAGGATTATTGATGCGATAAAGGCTAGACACTTTGCACCTCAGAATTTTCCTTGCCGCGTAAAATTCATGGATATAGGATTTGGTACTAAGGGTGCAATGAATAGTGTGGCGGTTGACTCTAGTTCTCATATTTATGTTGGAAATATTTCCAGTCACTTGGGCATCTCCCAGTTCAAACTCTGGAATCTGAATCGGCCGCGTCCATGTACAAGAGTTGTTCTCATTAAATTGGCATTTCGACTATTGAGTACGGTAATACTGGATGCATTTCCGGTTTGCAAGCAACAGAGGGAAATGAAAGACCCTGCAACTCTTGATGTGTCATCCTTAATTACATTTTTTGGAAATCCTGGACCTCCATTAGAGTTATGTGACAGGGATCCTGGTATCCTTTCAGTAACTGTCTGTAGTGGTTTTCCAGATGATATAACTCTTGATTCAATCAGTCTTGCATTCATGGCAACATATAATGCAGACGAAGGTGTAAAGGCATTGAAGAGTTCTACAACTATTGTGTTACACCCTGGTCGGAATACTATTGCCTTGGATCTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTTACTGGGCAGATTGGGCAGTTGAGGTTTCCAAACCTAGAGCATCATGGTGTTTCAAAACTTGGTCCTGCAGAGAGTGATGATGTTATGAGTTATGAAAAGCCAGCTAAACCTATTTTGAAGGTTTCCAAACCTAGAGCACTTGTGGATCTTGATGCTGCTGTTTCATCTGATTTGCTAATAAATGAACATCAATGGGTTGGTATTTTAGTTCGGCCGTTAAATTACTCCCTCAAGGCTGCTGTCTTGCATATTGATACTGGTCCAGGATTGGAGATTGAAGAGACAAACATAGTTGAGATGGAAAGCTATACTAGTGTATCGGAGAATGATGAGGACGATGCTTCTAACCTTACTGCGGAAACTCTCAAGAGAGCCAATGATGAGGTTCTGGCAATTGTAGTATTTTGCTCAGTCCCATGCCAAATCTATCCATTCGCAAACACTCCACTTCCTTTTAAAAACTTCCAAAGATCTCCTCGAGTTTTAGATGCCGACTCTAGTGCATGCATTGTTGTATCATCTGTTCTTGTTAGAAATGGCTGA 1629 0.4052 MEYSHGLIHGSSAATSGVSVTNASFCKNNTLDPTLINGKIVICTIENFTDKREEKSIIVKQGGGVGMILIDHNAKEAEADIIDALTVKLPNLGVNVLPMQFTQIKDPMEIVKMEITNPTGAYFHVEELVEVARLLSLRSADDVPAVEEVIAREAAVSGFALIEYRRIIDAIKARHFAPQNFPCRVKFMDIGFGTKGAMNSVAVDSSSHIYVGNISSHLGISQFKLWNLNRPRPCTRVVLIKLAFRLLSTVILDAFPVCKQQREMKDPATLDVSSLITFFGNPGPPLELCDRDPGILSVTVCSGFPDDITLDSISLAFMATYNADEGVKALKSSTTIVLHPGRNTIALDLPPQKPGSYVLGVLTGQIGQLRFPNLEHHGVSKLGPAESDDVMSYEKPAKPILKVSKPRALVDLDAAVSSDLLINEHQWVGILVRPLNYSLKAAVLHIDTGPGLEIEETNIVEMESYTSVSENDEDDASNLTAETLKRANDEVLAIVVFCSVPCQIYPFANTPLPFKNFQRSPRVLDADSSACIVVSSVLVRNG* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4038 542 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 261 486 IPR045126 GO:0048193|GO:1990071
Psa1g4038 542 Gene3D - 2 106 - -
Psa1g4038 542 CDD PA_subtilisin_like 11 71 - -
Psa1g4038 542 PANTHER CLUB-RELATED 261 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4038 Psa-Chr1 327949173 327951893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4038 20 95 Subtilisin-like Serine Gene Family AT4G34980 40.789 1.96e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4038 K20307 - gmx:100787264 339.347