Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4009 ATGTCTTCTTATACCCTTTTTCTCTTTCTAGCTTCATTCTCTTTCATCCTTTCTTCTCTAACTCTTTCATTTGCAAATACTGACCCTTCTGATGTTCAAGCTCTTGAGGTTATGTACAATGCGTTGAATAATCCAACTGAATTAACGGGTTGGAAAATTGGTGGCGGCGATCCATGTGGAGATTCATGGAAAGGGATAACTTGTGATGGTTCAGCTGTTGATTCAATTGATCTCTCTGGTTTAGGACTCCATGGAACTCTTGGATATTTGCTTTCTGACCTTATGTCACTGAAAAAGCTTGACTTGAGTGATAACAAGATCCATGATACAATTCCCTATCAGTTGCCACCTAATCTTACAAGCCTAAATCTAGCAGGAAATAACTTAACTGGAAATCTTCCTTATTCCTTTTCTGCCATGGTTTCACTCACTTATCTGAATGTGAGCCATAACGCGCTCTCCCTGTCAATCGGCGACTTTTTTGCTAATCATTCCCGTCTTGATACCGTGGATCTATCATTTAATAACTTTTCCGGGGATCTTCCACCTTCATTTGAGTCACTGACAAATCTATCTTCTATTTTCTTGCAGAACAACCAATTGACCGGCTCTCTCACTATTCTCGCTGGTTTGCCTTTGGATACATTAAATGTTGCAAACAATAATTTCAGTGGATGGATACCTCACGAGCTTAAATCTATCAATAATTTCATATATGATGGAAATTCTTTCGATGACGGCCCTGCACCTCCTTCACCTCCTTCACCAGAATCTACTTCGCCCCCACCTAGCGAACCTCATAAAAGTAATCATCACTCCGGGTCTGATTCACAAACTAAAACACACGGTTCTAATGCTGATGGCCATAAAGGAGCATCGGTGGGGGCCATTGTAGGAATTGTTTTAGGTTCGGCGTTGGTGTGTTCTATTGTGCTAGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAAGGAAAAAGGTTCAAGAACTTCTAATGGGAGCCTTCCTCATGGAACCGTTAACGTAACTCCTCAGATGCAGGAGCAGAGGGTGAAAAGTGCTTCTGTTATTACAGATCTCAAACCTCGTCCTCCGTCAGAAAATGTGACAATGGATAGGATGCCTGTAAAAAGTGGATCTGTAAGGCAGATGAGGTCTCCGATAACTTCCACGTCCTACACGGTTGCTTCCCTCCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATCGGTGAAGGTTCTCTTGGTCGAGTTTACCGGGCTGAATTCCCAAATGGGAAGATAATGGCGGTTAAGAAGATTGACAATGCAGCATTGTCCTTACAAGAGGAAGATAATTTTCTTGAAGCTATTTCAAATATGTCACGCCTGCGGCATCCAAATGTTGTTACACTGGCTGGATATTGTGCAGAACACGGCCAGCGGCTTTTAATTTATGAACATATTGGAAATGGAAATCTGCACGACATGCTACATTTTGCTGAAGATAGCAGCAAAGCTTTACCTTGGAATGCCCGTGTGCGCATAGCTCTTGGCACAGCCCGGGCCTTAGAGTACTTGCACGAAGTTTGCTTGCCCTCAGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTCGACGAAGAGCTCAATCCTCACCTTTCTGACTGCGGCTTAGCTGCTCTAACACCAAACACCGAGCGACAGGTATCATCAACTCAAATGGTTGGTTCATTCGGTTATAGCGCTCCTGAATTTGCATTATCAGGAGTATACACCGTAAAAAGCGATGTTTACAGTTTTGGTGTGGTTATGCTTGAACTTTTAACTGGTCGGAAGCCGCTTGACAGTTCAAGAGCTAGAGCTGAACAGTCGCTTGTGAGGTGGGCTACACCGCAACTCCATGATATCGACGCCTTGTCAAAAATGGTCGATTCCTGTTTGAATGGCATGTATCCTGCAAAATCTCTTTCACGCTTCGCCGATATCATTGCCCTCTGTGTTCAGCCGGAACCGGAATTTCGACCTCCAATGTCCGAGGTGGTGCAAGCATTGGTCCGGTTAGTGCAAAGAGCAAGTGTGGTTAAAAGGAGACCAAGTGATGAATCTGGTTTTGGCTACAAGACTCCAGATCATGAGGGCATAGACATATCATTTTAA 2148 0.4306 MSSYTLFLFLASFSFILSSLTLSFANTDPSDVQALEVMYNALNNPTELTGWKIGGGDPCGDSWKGITCDGSAVDSIDLSGLGLHGTLGYLLSDLMSLKKLDLSDNKIHDTIPYQLPPNLTSLNLAGNNLTGNLPYSFSAMVSLTYLNVSHNALSLSIGDFFANHSRLDTVDLSFNNFSGDLPPSFESLTNLSSIFLQNNQLTGSLTILAGLPLDTLNVANNNFSGWIPHELKSINNFIYDGNSFDDGPAPPSPPSPESTSPPPSEPHKSNHHSGSDSQTKTHGSNADGHKGASVGAIVGIVLGSALVCSIVLVALVFCIRKLKGKEKGSRTSNGSLPHGTVNVTPQMQEQRVKSASVITDLKPRPPSENVTMDRMPVKSGSVRQMRSPITSTSYTVASLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKIMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEHIGNGNLHDMLHFAEDSSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRARAEQSLVRWATPQLHDIDALSKMVDSCLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGYKTPDHEGIDISF* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4009 715 PANTHER OS01G0253100 PROTEIN 23 711 IPR045271 GO:0004714|GO:0006468
Psa1g4009 715 Gene3D Transferase(Phosphotransferase) domain 1 484 702 - -
Psa1g4009 715 Gene3D Phosphorylase Kinase; domain 1 369 483 - -
Psa1g4009 715 ProSiteProfiles Protein kinase domain profile. 406 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4009 715 SUPERFAMILY L domain-like 28 234 - -
Psa1g4009 715 MobiDBLite consensus disorder prediction 248 288 - -
Psa1g4009 715 SUPERFAMILY Protein kinase-like (PK-like) 383 681 IPR011009 -
Psa1g4009 715 MobiDBLite consensus disorder prediction 248 263 - -
Psa1g4009 715 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Psa1g4009 715 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 23 711 - -
Psa1g4009 715 Gene3D Ribonuclease Inhibitor 28 255 IPR032675 -
Psa1g4009 715 Pfam Leucine rich repeat 96 153 IPR001611 GO:0005515
Psa1g4009 715 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Psa1g4009 715 CDD STKc_IRAK 412 684 - -
Psa1g4009 715 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4009 Psa-Chr1 326837833 326843272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4009 140 715 Strubbelig Receptor Gene Family AT4G22130 70.588 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Psa1g4009 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4009 - - gmx:100803711 1110.52