Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3997 ATGGCTAATGGTGATTGGGATCTCTTTTCCATTGTGCATAGTTCCAAAGATACCTTCTTAACTCCTTCTTCCACCATATTTGAAACATCACCTCATATTCAAACAACTTTTGAAACTTCACCTCACACCCTAACCACCACCACCACAAATACGATTATATCACTTCAAAATCACACACCATACTTTGATGATTTTACTTTGTCCCATGAAAATAACTCAGTCCTTTTTTCTCCGCTGAAATCAAATGATTTCTTATCTTTCAAAAATTTTATATCCAATTCCAATCCTACCCTCACAAGCCCTATAAGGACCCCTACCATCACTTCTCTCAACACCAATATCTCTGCCTTCATTACCCCTGTCACTACTAACACCACTTTCACGACTCCCACCCTCACCGCCATTATCCCCACCACGACCTTTACTTCTCCTATCTCTACTACCACAACTAATATTAACACTAGTATTAATGGAACCAAACGTTATCCTATCATTTTGGATTTTCCAATATTTATCAAACAACAACAAACTAAACCAAACAACAACGATCAAGGGGTTTCCCCCAAACCTTCGGCCAACATTGAAATTACAACTGCACATTTTGATCTTGCATACAATCATCCATCGGTTCTTCGAAAAATCCAGAGAAAGTGCAATCAACTACCAATTCAAGTACCCCAAACTAGTTTTGGGGTTATGCCAAATACACTTTCACTACATCCAAATCGAAAAGTTTGGAAAAGAAAGAATAATAATGTGAAGATATTGGAGTGTCATTTGAGTGTCGAAAAAATCAAAGAAGATCCATGGACATGGAGAAAATATGGAGAAAAAATTATCAAAGGGTCTTCACATCCAAGAAGCTATTACAAATGTAGCAGTTTCAATATTTGTTCGGCAAAAAAAATTGTAGAAAAAAGCAAAAACAAAGAGAACACTTATGTTGTAACGTATAAAGGACATCACAATCATAAAGAGCCAAAACGTAAACATAAATTTGCCATTGGTAGCTTTCGAAATAAATCATCAAAGGAAGGATTATCCATTGCTAAAGTTGCTGAATCATCCTCAAATGTAAGAAACATGGGTTTGTCTAATGTTGTAACGACACACTTTGATCAGACTGAGAACATCAATACTCAAATTCTCTCAACTCAATCAAAAGTCCTATATCCAAAAAATGAACTTACAAAAAATCACTTATTTGTTTCCCAAGAAGTTGTATCGTCTTCGAATGTTGAAAACTTGAGTTCATCTAATGTAATGATGTTGCAGTTTGATGAGCCAAAGAGTAGTGATGCTCAAGTTTTCACTTGTGAATCAACAATTCCTTATTCACAAACAAAATCGATGGGAAGTTGCGATGATGACCATGATATTTTGATACCAAACATGAGAGCAATGTCAGAGGATATTTTACTAGACTTCAACCACCTCAATGGTAGGAGGTTTTTCTCTTAG 1461 0.358 MANGDWDLFSIVHSSKDTFLTPSSTIFETSPHIQTTFETSPHTLTTTTTNTIISLQNHTPYFDDFTLSHENNSVLFSPLKSNDFLSFKNFISNSNPTLTSPIRTPTITSLNTNISAFITPVTTNTTFTTPTLTAIIPTTTFTSPISTTTTNINTSINGTKRYPIILDFPIFIKQQQTKPNNNDQGVSPKPSANIEITTAHFDLAYNHPSVLRKIQRKCNQLPIQVPQTSFGVMPNTLSLHPNRKVWKRKNNNVKILECHLSVEKIKEDPWTWRKYGEKIIKGSSHPRSYYKCSSFNICSAKKIVEKSKNKENTYVVTYKGHHNHKEPKRKHKFAIGSFRNKSSKEGLSIAKVAESSSNVRNMGLSNVVTTHFDQTENINTQILSTQSKVLYPKNELTKNHLFVSQEVVSSSNVENLSSSNVMMLQFDEPKSSDAQVFTCESTIPYSQTKSMGSCDDDHDILIPNMRAMSEDILLDFNHLNGRRFFS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3997 486 Gene3D WRKY domain 253 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3997 486 Pfam WRKY DNA -binding domain 267 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3997 486 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 481 IPR044810 GO:0003700
Psa1g3997 486 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3997 486 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 5 481 - -
Psa1g3997 486 SUPERFAMILY WRKY DNA-binding domain 264 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3997 486 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3997 Psa-Chr1 326093926 326096427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3997 247 342 WRKY Transcription Factor Family AT5G52830 48.958 3.27e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa1g3997 WRKY 7.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3997 - K13425 mtr:MTR_2g024380 338.576