Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3989 ATGGTTTCTCTTGAAGAATCCCGCTCGAATTCGAATCGTTTTCCTTTACCGAGAAGCTATCAGTATCATAATCATTCATCTGTTTCCTCAAAATCGCAGCGGAATATTGGAAGATCCATGCGAACCAGAAGATCTAGTATCTTTGATGAAGATAACAGTAGTTGCACGTTTACCGAGAGATCAACGTGTGTATCGGAGAATTTAACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTCGCTTCCCGGAATATTAAATCCGGTAGGTCCTCTACGACTGAGCAGGACCTTCTCGATCTTTCACAGGCTTTCAGTGAGTATTCTGCTTGTAGTAGTGATATTTCCGGTGAGCTTCAGCGGTTGGCGACTCTGCCGTCGCCGGAATGTAATCTGAAGAGTGATGGTGGAGGTGATGGCGAGGAGGAAGTTGAGCCGGAGCCGTGCATGGGGTTTTTGCAGAGGGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGTATTGATGGTTTACAGTCTTCGTCGGTGGCTGTGAAACGTTCGGCGGCGGCGAAACTGAGGCTGCTTGCTAAGAATAGGGCTGATAATAGAGTTCTGATTGGCGAGTCCGGTGCGGTGCCTTTTCTAGTTCCTCTGCTTCGATGCACTGATCCATGGACGCAAGAACACGCAGTAACAGCGCTTTTGAATCTGTCACTTCACGAGGATAACAAAAAGCTGATATTCAATGCCGGTGCGGTGAAATCGTTGATTTATGTGTTGAAAACAGGAACAGAAACTTCAAAGCAGAACGCGGCGTGTGCGCTTCTGAGCTTAGCTTTGGTGGAAGAGAATAAGAGCTCAATCGGCGCTTCAGGTGCAATTCCGCCGTTGGTTTCGCTTCTGCTGAACGGTTCCAACAGAGGGAAGAAAGACGCTCTCACGACACTGTACAAGCTATGTTCTGTTAAGCAGAACAAGGAGAGAGCAGTGAGTGCCGGTGTGGTGAAGCCGCTTGTGGAGCTGGTGGCGGAGCAAGGGAATGGTATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGTGGGGATTGAAGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATAGCGGCACTTGTGGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAAGAATTTGCTGTTTTAACTCTTCTCCAGCTTTGTGCCGACAATGTTATAAACAGAGGGTTACTTGTTAGAGAGGGTGGGATTCCTCCCCTTGTAGCTCTTTCCCAGAACGGAACTCTTCGAGCTAAGCATAAGGCTGAGACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGACTTCAACTTCTTAG 1380 0.479 MVSLEESRSNSNRFPLPRSYQYHNHSSVSSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNIKSGRSSTTEQDLLDLSQAFSEYSACSSDISGELQRLATLPSPECNLKSDGGGDGEEEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPFLVPLLRCTDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLVGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADNVINRGLLVREGGIPPLVALSQNGTLRAKHKAETLLRYLRESRQEASTSTS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3989 459 Gene3D - 158 458 IPR011989 -
Psa1g3989 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 214 256 IPR000225 GO:0005515
Psa1g3989 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Psa1g3989 459 SMART arm_5 285 325 IPR000225 GO:0005515
Psa1g3989 459 SMART arm_5 203 243 IPR000225 GO:0005515
Psa1g3989 459 SMART arm_5 244 284 IPR000225 GO:0005515
Psa1g3989 459 SMART arm_5 367 407 IPR000225 GO:0005515
Psa1g3989 459 SMART arm_5 409 449 IPR000225 GO:0005515
Psa1g3989 459 MobiDBLite consensus disorder prediction 1 42 - -
Psa1g3989 459 PANTHER U BOX DOMAIN-CONTAINING 6 456 - -
Psa1g3989 459 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 456 - -
Psa1g3989 459 Pfam Armadillo/beta-catenin-like repeat 205 242 IPR000225 GO:0005515
Psa1g3989 459 Pfam Armadillo/beta-catenin-like repeat 287 325 IPR000225 GO:0005515
Psa1g3989 459 SUPERFAMILY ARM repeat 171 448 IPR016024 -
Psa1g3989 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Psa1g3989 459 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3989 Psa-Chr1 325740461 325744631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3989 151 452 U-box Gene Family AT2G23140 48.065 4.65e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3989 - - gmx:100806768 723.005