Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3986 ATGGATCCTGGGAAGCTGTTCATTGGAGGGATTTCCTGGGATACTAATGAAGACCGACTCAGACAGTATTTTCAGAGCTTTGGTGATGTGGTTGAAGCTGTGATTATGAAGGATCGTACCACGGGACGTGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTTCTGTTGCGGAACGGGTTGTTGTTGAAAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTCCCTAGAGATGATCAGAACGTGTTTAGCAGAAGCAACAGCAGCAGTCACGGGTCGCCGGGTCCTACTCCTATTCGCACGAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGACTGATTTCAAGAATTACTTCGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTATGACCATAACACACAACGGCCTAGAGGTTTTGGATTCATCACATTTGATTCTGAGGAATCGGTCGAGAAAGTGCTGCATAAAACTTTCCACGAACTTAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCCAAGGAGTTATCTCCCGGTCCAAGTAGAGGCCAGCTAGGTGGATTTAGTTACGGTACTATGAATAGGGTTAGTAGTTTTTCTAATGGTTTCGCACAGGGATATAATCCAAACCTCATTGGAGGACACGGACTTAGAATAGACGGTAGATTGAGCCCTGCTAATGTCGGCCGTAATGGATATACTCTTTTCAGTCCAAGTTATGGGACAGGACTCAACTTTGAGCCACCATTGAATGAAAATGAAAACTTGTCTAACTTTGTCATGGGACGTGCATTGAGCTCTCCCTACAGTGCAAGTCCGAGCCGGTACAATAATGCCATGGGGTATGTTGGTTCAAATGTTGGCAACAATTCAAACATAGGTTCAACAAATCAGAGTTTGTGGAGTAACGGAAATCTTAACTATGCTAATAACCCTGCAAACCCCGACTCTTTCCTAGGCTATGGAAATGAAAGTTCAAGTATCGGTTCTTTTGGTAATATCGGATCACTCTGGAGTACCTCTGTCGGTGGTACTACTAATCAAGCTGGAACGATTGGGTCTGGATATGGTAAGAGCAATCTTAATTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCCGTAGGTTATGGAAAGAGTAATGAAGGCATCGTTGAATCAGATTCATCATACGCTTTCTCAAATGGCGGTTACGGTGAGGCATACAAAAGTACTTATGACGCTGCACCATTTTATCAAGACCATACTTGGAAATCAACAACTTCTGAACTAGAGGATCCCGGTTCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGCTCTAGTGGTGGTCACGTTGGGGCTTATGCTGTTGCTAATAGACAATCAAACAGAGGAATCGCTGCTTAG 1434 0.4303 MDPGKLFIGGISWDTNEDRLRQYFQSFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVVEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTETDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEESVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGTMNRVSSFSNGFAQGYNPNLIGGHGLRIDGRLSPANVGRNGYTLFSPSYGTGLNFEPPLNENENLSNFVMGRALSSPYSASPSRYNNAMGYVGSNVGNNSNIGSTNQSLWSNGNLNYANNPANPDSFLGYGNESSSIGSFGNIGSLWSTSVGGTTNQAGTIGSGYGKSNLNYRLGDVILGSKAVGYGKSNEGIVESDSSYAFSNGGYGEAYKSTYDAAPFYQDHTWKSTTSELEDPGSLSFGLENAVSDLMRKSSSGGHVGAYAVANRQSNRGIAA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3986 477 MobiDBLite consensus disorder prediction 84 100 - -
Psa1g3986 477 SMART rrm1_1 5 76 IPR000504 GO:0003723
Psa1g3986 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Psa1g3986 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 477 - -
Psa1g3986 477 Gene3D - 3 86 IPR012677 -
Psa1g3986 477 MobiDBLite consensus disorder prediction 79 102 - -
Psa1g3986 477 SUPERFAMILY RNA-binding domain, RBD 98 208 IPR035979 GO:0003676
Psa1g3986 477 Gene3D - 103 189 IPR012677 -
Psa1g3986 477 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Psa1g3986 477 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Psa1g3986 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Psa1g3986 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Psa1g3986 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Psa1g3986 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Psa1g3986 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Psa1g3986 477 SUPERFAMILY RNA-binding domain, RBD 3 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3986 Psa-Chr1 325675129 325679059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3986 6 219 Eukaryotic Initiation Factors Gene Family AT2G36660 27.928 7.77e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3986 K14411 - pvy:116115801 562.762