Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3975 ATGGCTAATGTCGATTGGGATCTCTTTGCCATTGTGCGTAGCTGCAAAGCTACCTCTTTAACCCGTTCTTCCACCATTTTCGAAACATCACCTCACATTCACTCCACTTTTGAAACTTCACCTCACACCCTAACCACCACCACTACGAATAAGATTATATCACTTCAAAATTACACACCATCTTACTTTGATGATTTTACCTTGTCCTGTGAAAATAGCCCAATTCCTTTTTCTCCGCTTAAATCAAATGATTTCTTACAAATAGGAACGTTTATACCCAATTTTAATCCCACCCCCATAACCCCCGTAAGAATCCCCACCATCACTTCTCCAAACACCACTATTTCTGATGTCGTTACCCCTGTCACTACTACCACCTCTTTCATGACTCCCACCCTTAACACCACTATCCCTAACTCGACCTTTGCTTTACCTACCATAACTAACATTAGCACTGGTATTAATGGAATCAACCAGTATCCTACTGTTTTCGATTTTCCAATATTTGTCGGACAACCACAAATTAAACCAAACAACAACAATCAAATGGTTTTCCCCAAACCTGCTGCCTATATAGAAATTACAACTGCACATTTTGATCTTGCATACAATCATCCACCGGTTCTCCACGAACTCCAGAGAGAGCGCAATCAACTACCAATTCAAGTATCCAAAACTAATTTTGGGATTATACCGAATACACTTTCACAACATCCAAAACGAAAATCTTGGAAAAGGAAGAATAATAATACGAAGATATTGGAATGCCATTTGAGTGTAGAGAAGATCAAAGAAGATCCATGGACATGGAGAAAGTATGGAGAAAAAATCATCAAAGGGTCTTCACATCCAAGGAGCTATTACAAATGTAGCAGCTCAATGATTGTTCGGCAAGAAAACTTGTAG 906 0.3918 MANVDWDLFAIVRSCKATSLTRSSTIFETSPHIHSTFETSPHTLTTTTTNKIISLQNYTPSYFDDFTLSCENSPIPFSPLKSNDFLQIGTFIPNFNPTPITPVRIPTITSPNTTISDVVTPVTTTTSFMTPTLNTTIPNSTFALPTITNISTGINGINQYPTVFDFPIFVGQPQIKPNNNNQMVFPKPAAYIEITTAHFDLAYNHPPVLHELQRERNQLPIQVSKTNFGIIPNTLSQHPKRKSWKRKNNNTKILECHLSVEKIKEDPWTWRKYGEKIIKGSSHPRSYYKCSSSMIVRQENL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3975 301 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 293 IPR044810 GO:0003700
Psa1g3975 301 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 5 293 - -
Psa1g3975 301 SMART WRKY_cls 264 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3975 301 Gene3D WRKY domain 240 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3975 301 Pfam WRKY DNA -binding domain 265 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g3975 301 SUPERFAMILY WRKY DNA-binding domain 262 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g3975 301 ProSiteProfiles WRKY domain profile. 259 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3975 Psa-Chr1 325300927 325303014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3975 242 293 WRKY Transcription Factor Family AT5G52830 53.846 1.34e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa1g3975 WRKY 4.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3975 K13425 - mtr:MTR_2g024380 197.208