Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3958 ATGACGCATTTACCTTCGAAAAACCTATGGATTCGGAAACAACAATGTCCTTGTGGAGATTGGAAGTGTTACATTACATATGAAGGTGTTTCTAAGGAGAATTCTGCATCACCAGAATTAGTGAAACCTGATAAAACATCATCTTGTAGAGCTTTCGTTACCCCTTATGTTGGAATGGTGTTTAAGACTGATGATGAAGCTTTTGAATATTACGGTAATTTCGCAAGGAAGAATGGTTTTTCTATTAGGAAAGAAAGATCTAGAATTAGCCCTCAGTTAGGTGTTTATAAGCGTGACTTTGTTTGTTATCGATCCGGGTTTGCTCCGGTGAAGAAGAAGGCGAACGGTGAACATCATAGAGATAGGAAATCGGTGAGATGTGGATGTGATGCGAAAATGTATCTGTCTAAGGAGGTTATGGATGGTGTTTCCCAATGGTTTGTTGTGCAGTTTAGTAATATACACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTACCTGCGTATAGGAAAATTCATGAGGCTGATCAAGAGCGGATACTGTTGCTTTCGAAAGCCGGGTTTCCGATACATCGGATAGTGAAAATGCTTGAGCTGGAAAAAGGGATTCAAGGTGGGCATTTGCCTTTCTTGGAAAGGGATGTTAGGAACTTTGTCCAAAACCGCAAGAAGGTTGTTCAAGAGAACGAGGCGTTGCTAAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGTGTTTAAAGCCGTGAAAGAAGCTGACGTTGAGTTTGTTTATGATTTTACAGTCGATAAGAATGAGAAAGTTGAAAATATAGCTTGGTCGTACGGTGATTCTGTTAATGCAAATGCTTTGTTTGGTGATGTAATTTATTTTGACATTTCTTATCGGTCCGTCGCGTATGGATTGCATTTTGGAGTGTGGTTTGGTATTGATAATTGTGGTAGAACAATTTTGTTCGGCTGTGTTTTACTCCAAGATGAAACACCGCAATCCTTCTCATGGGCATTACAGACTTTTCTCCAGTTCATGAGAGGAAGATGTCCACAAACAATTATATCTGATCTTGACCCTAGTCTTAGAGATGCAATTAGAAGCGAATTTCAAGGAACTAAACATGTCATTCCACTGTGGAATATTTTGAACAAGGTACATAGTTGGTTTTCTCTTCCTCTTGGATCTCGCATTGTAGAATTTAAATCAGAGTTCAATGCATTATTTCAAATTGAGAATACAGAGGAATTTGAACTTCAATGGAGCCAAATGATTTCTATGTTTGGACTTGGTTCAGATAAACATATTGATTTACTGTATTCGGTTCGAACTTCCTGGGCGCAATCATATGTAAGAGGTTATTTTTTGGCTCAAATGGTGACAACAGCTTATTCCAAGTCTATAGACGTGTTTTTTGAAGGGGTCTTCACTGAACATACATGTTTGCGTAGCTTTTTTGAACAGGTTGGTATTTCTGCAAATTTTCGTCACCAATCACATGACGAGACTCAATATACAAATCTCAGAACCTACATACCAATCGAAGAGCATGCGCGGGGCATCCTCACACCTTATGCTTTCAATTCTTTGCAACAAGAGTTATTGTTGGCAATGCAATACTCGACATCTGAAGTGGCCAATGGATCATACGTTATACGACACTTCAAAAGGTTGGATGGAGACCGGCTCGTGATGTGGTTGGCGGAAGAAGAACAGATACACTGCTCTTGCAAAGAGTTTGAATCGTCAGGGATATTATGCAGACATGCTCTTCATGTACTCGTAATAAAAAATTACTTTCAACTTCCTGACAGATACTATTTAAGTAGATGGCGTCGGGAATGTTCTTTCCCTGTCGAGGATGAGCATAACACCAACCAAAGTATTATTGGTAGGGAATGGTTTCAAGAATATCAATCTCTAGTTGAAACTTTGTTGTCGGAATCATCAATTACAAAGGAGCGATCTGACTATGTTCGCAAAGAACTGACAAAAGAACTCAATAGGATTCTTAACGAGGTTAGAAATCTGCCCGAGACTGATGATGTTTGCAGCATGAACGTGTCGGTTTCGCCAAATAGCTAA 2088 0.3918 MTHLPSKNLWIRKQQCPCGDWKCYITYEGVSKENSASPELVKPDKTSSCRAFVTPYVGMVFKTDDEAFEYYGNFARKNGFSIRKERSRISPQLGVYKRDFVCYRSGFAPVKKKANGEHHRDRKSVRCGCDAKMYLSKEVMDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGHLPFLERDVRNFVQNRKKVVQENEALLSEKRENDVLELLEVFKAVKEADVEFVYDFTVDKNEKVENIAWSYGDSVNANALFGDVIYFDISYRSVAYGLHFGVWFGIDNCGRTILFGCVLLQDETPQSFSWALQTFLQFMRGRCPQTIISDLDPSLRDAIRSEFQGTKHVIPLWNILNKVHSWFSLPLGSRIVEFKSEFNALFQIENTEEFELQWSQMISMFGLGSDKHIDLLYSVRTSWAQSYVRGYFLAQMVTTAYSKSIDVFFEGVFTEHTCLRSFFEQVGISANFRHQSHDETQYTNLRTYIPIEEHARGILTPYAFNSLQQELLLAMQYSTSEVANGSYVIRHFKRLDGDRLVMWLAEEEQIHCSCKEFESSGILCRHALHVLVIKNYFQLPDRYYLSRWRRECSFPVEDEHNTNQSIIGREWFQEYQSLVETLLSESSITKERSDYVRKELTKELNRILNEVRNLPETDDVCSMNVSVSPNS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3958 695 Pfam FAR1 DNA-binding domain 69 160 IPR004330 -
Psa1g3958 695 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 31 683 - -
Psa1g3958 695 Pfam SWIM zinc finger 570 594 IPR007527 GO:0008270
Psa1g3958 695 ProSiteProfiles Zinc finger SWIM-type profile. 564 599 IPR007527 GO:0008270
Psa1g3958 695 Pfam MULE transposase domain 292 385 IPR018289 -
Psa1g3958 695 SMART 26again6 574 601 IPR006564 GO:0008270
Psa1g3958 695 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 683 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3958 Psa-Chr1 324533948 324536987 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa1g3958 MULE 8.6e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3958 - - gmx:100817107 1181.01