LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g3953	ATGGACTCGAAATCTATTGCTAGAGTTCTCTCGAAACAACATCAGAAAACATCTGGGATTCAAACACCTGAGGTGAAAGACCTCAAGTTTTCTTCACTGTCGCTTCAGAAACCAGGCAAACCTGAGCTAACTGCTGCCGAAGATTTGTCTAAGCAGAAGAATATTGGGGAGATTTATGAAAGCAAGAAGTTTGGTGTTCAATTCCAAAAGGGTTCATCTGTTGATTCAGTGAGTAATAAATTTGGTTCTGGTTCTTCCTCATCCGCTCCTGGCAAAGCATCCGGAGAAGCGGTTCGTGCTGTTAGTGGTAACATAGGCTCACAGGAAAGCTCTATTGATCAAGAGAGAAAGACCTCAGAATATGGAAGTGTGAAGAGCAGTTCTGTTTCTGCTAAAGCTAGCGATGGTGCCAGTAGTATTGCAAAGACAAGTGGTAGTGCTAAGATTAGCGATCGAGCTGATTTCGTTGAGAGTGGTAAGAGCAGTATATGCAGGGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGTGTAAACAAGCCTCACAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTGGTTAGAACTAGAGACGGAGCATTGGGTTTAGGCCACTTTAGGCTTCTCAAGAGGTTGGGTTGTGGAGATATTGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTGATGGACAAAGGGTCGTTAGCGAGTCGTAAGAAGTTACTTCGTGCTCAGACGGAACGGGAAATTCTTCAGTCACTTGACCACCCGTTTCTCCCAACTTTGTACACTCATTTTGAAACAGAGAAATTTTCGTGCTTGGTGATGGAATTCTGCCCGGGTGGTGACCTACATACACTTAGACAGAAACAACCAGGGAAGCACTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAAGTCCTACTGGCGATGGAGTACCTCCACATGCTCGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATCATGCTCTCCGACTTTGACCTTTCCCTCCGATGTGCTGTTAGTCCAACACTCGTTAAATCCTCGTCCATAGATTCAGAGCCTTTAAGAAGGAATACCGGTTACTGTGCTCAGCCTGCGTGTATCGAGCCGCCGTCCTGCATTCAGCCATCCTGTGTTGCTCCTACCTCATGTTTTTCACCCCGACTCTTTTCTAGCAAATCTAAGAAAGACCGGAAGCCCAAAACTGAACTTGGCAATCAAGTAAGTCCTCTACCGGAGCTCATTGCCGAGCCCACCGATGCCCGGTCTATGTCCTTTGTCGGAACCCACGAATACCTTGCACCCGAGATAATCAAGGGTGAAGGTCACGGGAGTGCAGTTGATTGGTGGACTTATGGAATCTTTCTATACGAGTTATTGTTCGGCAAAACACCGTTTAAGGGATCCGGAAACCGAGCCACGCTGTTTAACGTGGTAGGTCAGCCCTTGCGATTTCCAGAAGCACCTGTTGTTAGCTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTCAAGGAACCTCAGCACAGATTGGCGTATAAACGAGGTGCAACTGAGATTAAGCAGCATCCCTTTTTCGAAGGTGTGAATTGGGCGTTGATTCGATGTGCTACCCCGCCCGAGATTCCAAAGGCTGTTGAGTTTGAGAAGATACCTTCCCCGGCTGCCTCGTCCGGCGGCGAAAAGGCTGCTGTTAACCACATGTCAACAACAACAGGTGGTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG	1845	0.4623	MDSKSIARVLSKQHQKTSGIQTPEVKDLKFSSLSLQKPGKPELTAAEDLSKQKNIGEIYESKKFGVQFQKGSSVDSVSNKFGSGSSSSAPGKASGEAVRAVSGNIGSQESSIDQERKTSEYGSVKSSSVSAKASDGASSIAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSIDSEPLRRNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKDRKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPAASSGGEKAAVNHMSTTTGGNQKGSDNYLEFDFF*	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g3953	614	MobiDBLite	consensus disorder prediction	1	52	-	-
	Psa1g3953	614	SUPERFAMILY	Protein kinase-like (PK-like)	188	572	IPR011009	-
	Psa1g3953	614	MobiDBLite	consensus disorder prediction	10	29	-	-
	Psa1g3953	614	Gene3D	Transferase(Phosphotransferase) domain 1	300	569	-	-
	Psa1g3953	614	PANTHER	SERINE/THREONINE KINASE FAMILY PROTEIN	4	614	-	-
	Psa1g3953	614	Gene3D	Phosphorylase Kinase; domain 1	207	299	-	-
	Psa1g3953	614	PANTHER	FLIPPASE KINASE 1-RELATED	4	614	-	-
	Psa1g3953	614	MobiDBLite	consensus disorder prediction	583	602	-	-
	Psa1g3953	614	MobiDBLite	consensus disorder prediction	77	92	-	-
	Psa1g3953	614	Pfam	Protein kinase domain	215	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3953	614	Pfam	Protein kinase domain	449	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3953	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	335	347	IPR008271	GO:0004672\|GO:0006468
	Psa1g3953	614	ProSiteProfiles	Protein kinase domain profile.	214	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3953	614	MobiDBLite	consensus disorder prediction	77	128	-	-
	Psa1g3953	614	SMART	serkin_6	214	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3953	614	CDD	STKc_phototropin_like	213	570	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g3953	Psa-Chr1	324302841	324305614	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g3953	111	614	AGC Kinase Gene Family	AT5G47750	83.960	0.0	858

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Psa1g3953		Pkinase	2.7e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g3953	K08286		-	gmx:100798088	991.875