Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3947 ATGGGGAATGTGAATGGCAGAGAAGAAGATTTCAACGGCACACTATCGGAAGCTTCATCTGATGACGGAGAAAGAGAGGGAGGTTTTGACAGTGTGAGTGATTCCATGTCTGTGCCTGATGGGGTCATCGAAAATTCTGCACCTTCTGAGGAAATGGGTCATTCTCCACCTGCTAGCCCTAGAACTACTCAATCTCCATTAATGTTCTCTCCTCAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCAGGCTCCAACCCCTTCCTGGATGCAAACTACTTCAGGGTACGAGGATATGTTTGATGAGATTGGGATTCCGACTATGATTACTTGGAGCTATGGTGGTAAAGAAGTCTCCGTGGAGGGATCATGGGATCATTGGAAATCAAGAATTCCCTTGCAGAGATCAGGAAAGGACTTCACTATACTGAAGGTGCTGCCATCTGGTGTGTACCAGTTTAGGTTTATCGTGGATGGACGATGGAGGCACGCACCTGACTTGCCTTGGGAACAAGATGATGCTGCCAATACCTACAACATTCTCGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTCGAACCACCTAAATCACCAGACTCTAGTTACAACAACTTACACCTAAGTTCCGAAGATTATGCAAAGGAGCCGCCACTGGTTCCTCCATTCATGCAAATGACTCTTCTTAACGTCCCTTCAACAAATATGGAATTCGAACCTCTCGTGTCCAGACCACAGCACGTAATGCTCAATCATCTCTATATGCAGAAAGGAAAGAATAGCCCTTCAGTGGTTGCGCTCGGGACAACTCATCGATTTGTAGCGAAATATGTCACTGTGGTTCTGTACAAGTCTTTGCAGAGGTAA 885 0.4565 MGNVNGREEDFNGTLSEASSDDGEREGGFDSVSDSMSVPDGVIENSAPSEEMGHSPPASPRTTQSPLMFSPQVPVVPLQRPDEMQAPTPSWMQTTSGYEDMFDEIGIPTMITWSYGGKEVSVEGSWDHWKSRIPLQRSGKDFTILKVLPSGVYQFRFIVDGRWRHAPDLPWEQDDAANTYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLHLSSEDYAKEPPLVPPFMQMTLLNVPSTNMEFEPLVSRPQHVMLNHLYMQKGKNSPSVVALGTTHRFVAKYVTVVLYKSLQR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3947 294 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 220 290 IPR006828 GO:0005515
Psa1g3947 294 Gene3D Immunoglobulins 102 189 IPR013783 -
Psa1g3947 294 SUPERFAMILY AMPKBI-like 189 291 IPR037256 -
Psa1g3947 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 294 IPR043554 -
Psa1g3947 294 Gene3D - 195 292 - -
Psa1g3947 294 SMART AMPKBI_2 202 292 IPR006828 GO:0005515
Psa1g3947 294 CDD E_set_AMPKbeta_like_N 108 184 - -
Psa1g3947 294 SUPERFAMILY E set domains 107 192 IPR014756 -
Psa1g3947 294 MobiDBLite consensus disorder prediction 1 66 - -
Psa1g3947 294 Pfam Glycogen recognition site of AMP-activated protein kinase 107 186 IPR032640 -
Psa1g3947 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3947 Psa-Chr1 323968326 323972584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3947 117 187 Protein tyrosine phosphatase (PTP) family AT3G01510 35.616 3.24e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3947 K07199 - gmx:100777497 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0071 4 3553630 3556654 Psa1g3947 1 323968326 323972584 PCT