Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3945 ATGGTTGAATCAGATAACGAGTCAGGAGGAGTTCAAACAGGTTGCAGAGAGCAAGACGGGTTTCTTCCAATAGCAAACGTGAGCAGGATCATGAAAAAGGCTTTACCAACAAACGCAAAGATCTCGAAAGAAGCAAAAGAAACATTACAAGAGTGTGTATCTGAGTTCATCAGTTTCATAACAAGTGAAGCTTCTTATAAGTGCCAGAAAGAGAAGAGGAAAACAATCAACGGTGACGATCTTCTTTGGGCTATGACAACAGTTGGATTTGAGGATTATGTTGAGCCATTGAAGATCTATTTGCGTAAGTATAGGGAAATGGAAGGGGAGAAGAATGCTATGATTGGAAGAGGTTTTCAGAGAGGTCAAGGGAATGTTGGTGAAGGTGTTGGTTGTGTTTATGGTTATGACTTTTCATCTTCAATGATGATGATGATGGAATATAGTAACATGTATGGATCTGGGAGTGGATCACAGTCTTCGGGAAGAAGTACTAGATAA 501 0.3992 MVESDNESGGVQTGCREQDGFLPIANVSRIMKKALPTNAKISKEAKETLQECVSEFISFITSEASYKCQKEKRKTINGDDLLWAMTTVGFEDYVEPLKIYLRKYREMEGEKNAMIGRGFQRGQGNVGEGVGCVYGYDFSSSMMMMMEYSNMYGSGSGSQSSGRSTR* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3945 166 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa1g3945 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Psa1g3945 166 Gene3D Histone, subunit A 11 125 IPR009072 GO:0046982
Psa1g3945 166 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Psa1g3945 166 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Psa1g3945 166 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Psa1g3945 166 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 151 - -
Psa1g3945 166 SUPERFAMILY Histone-fold 18 116 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3945 Psa-Chr1 323891033 323892044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3945 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.512 1.88e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa1g3945 CBFD_NFYB_HMF 1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3945 K08065 - gmx:100305641 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0068 4 3484470 3485491 Psa1g3945 1 323891033 323892044 PCT