Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3943 ATGGACCTCTTCGCCGCCGACCACGTCGCTCCATTTCCCGATACCGGAGACCTTCTCTTCGCAGCCGGCCTTCTCTCCAACCGCAACAATCCACAGAAACTCCGTCCCATCAGGTCCGTCCCTCCTCTTACTGCTCACCTAGTCAATGCTCAGCCCCCTTCCAAACTTCACCCTCCAGAATCTCCCTCTCAGACGCATGCCCCGACTGAATCCGGGTCGGGTCATTCTCCGTTGCCTAATAGGCAGGAACCCGGTTCGTCTTTGGATGATGAAGATGATGTTGACGACGAAGAGAATTCGTCGGGAAGTACTAAAGAATTTGGCTCGAGAAAGAGAAGGAAAAAGTCGGCGAGAAAGCTTGAATGTTTTGTAGAAGGTTTGGTTAAGAGGGTGATGGAGAAGCAAGAGCAGATGCATAAGGAATTGGTGGAAATGATAGAGAAGACGGAGAAAGAAAGAATGAATAGAGAAGACGCGTGGAGGCGCGAGGAGATGGAAAGAATTAAGAAAGAAGACGAAGCTAGAGCGCAAGAAAGGTCTCGTAGTTTAGCCTTAATATCGTTCATTCAGAAACTATTAGGCCATGAGATTCAGATTCCTCAACAAGCTATGAACCTATTGGGTCATGAAATTCAGATTCTTTCTCAACCAGCAGAAGGAAGCGGAAAAAAAGAAGAATACGGAGTTGAGGTAAACAACAACAAAAGAGAATTCAACGGTGATATGAGTAACAATAGATGGCCGGATGTGGAAGTACAAGCACTCATAGCGGTAAGAACTGCGTTGGAACACAGGTTTGGTGTCGGTCTTACAGGAGCAAAAGGATCGATATGGGAGGAGATATCTGAAGCATTACGCGGAAAGGGATACAATCGATCCGCGAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTACAAGAGGACAGTGGGAAGTGGCAAGAAACGGCCTCTAAATAGTAAAACTTGCCCTTACTTTGATGAATTGGATAATCTGTATAGAAATGGGTCATTCAACAGCCTTGGAAATGCATTGAGCAATACCAATAATGTTTCCATGAGTGAAGTAAAGGAGCAAGGTGAAATTTGA 1095 0.4548 MDLFAADHVAPFPDTGDLLFAAGLLSNRNNPQKLRPIRSVPPLTAHLVNAQPPSKLHPPESPSQTHAPTESGSGHSPLPNRQEPGSSLDDEDDVDDEENSSGSTKEFGSRKRRKKSARKLECFVEGLVKRVMEKQEQMHKELVEMIEKTEKERMNREDAWRREEMERIKKEDEARAQERSRSLALISFIQKLLGHEIQIPQQAMNLLGHEIQILSQPAEGSGKKEEYGVEVNNNKREFNGDMSNNRWPDVEVQALIAVRTALEHRFGVGLTGAKGSIWEEISEALRGKGYNRSAKKCKEKWENINKYYKRTVGSGKKRPLNSKTCPYFDELDNLYRNGSFNSLGNALSNTNNVSMSEVKEQGEI* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3943 364 MobiDBLite consensus disorder prediction 33 115 - -
Psa1g3943 364 ProSiteProfiles Myb-like domain profile. 239 305 IPR001005 -
Psa1g3943 364 Gene3D - 247 310 - -
Psa1g3943 364 SMART sant 243 307 IPR001005 -
Psa1g3943 364 Coils Coil 132 152 - -
Psa1g3943 364 CDD GT1 245 311 - -
Psa1g3943 364 PANTHER - 9 360 - -
Psa1g3943 364 Pfam Myb/SANT-like DNA-binding domain 245 334 IPR044822 -
Psa1g3943 364 MobiDBLite consensus disorder prediction 60 83 - -
Psa1g3943 364 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 9 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3943 Psa-Chr1 323809338 323811390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3943 111 339 Trihelix Transcription Factor Family AT5G47660 44.681 8.78e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa1g3943 Myb_DNA-bind_4 4.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3943 - - mtr:MTR_2g026725 447.203