Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3910 ATGGATTCAACAACGATGTATACTAGATTGATACACCCCCATGAAGGAATTGTTGGACAAGATGATTTGCAATCTGGTGTTGCTGCTGTCAATCATAAGGGTGATCCTTGTCTTGTTTTGACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGACCTTCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCCAGTAAAGCTACACCGAAAGCAATCATGCGGACAATGAACGTCAAGGGTTTAACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTCGGGATGACAGGTTCCTATCTTTTAGAAAGCCCTGGCACCGATAACTCATCTCCGAAGTTACCTACATCCGATACAAACGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCGGAGCGAAGATACATGGCAATGCTTGAAAGAGCGTGCAAGATGCTGGCTGATCAATTTATAGGTGCTTCTGCTATAGACACAGACAGCCAAAAGTTTCAAGGAATTGAAAATAAAGCACCAAGAGCTCCCTTGGTTGACCCTCTTGGCTTTTACTCCTTGCCGTCTACTGAGGCGGCCGGAGTGAATGTTCCAGAAGACGAAATTCCTCCAAGCCTCCCACCCCAAAGAGCCGATTGCTCAACCGAAAGTTGTTTAACATCGCACGAGAGCTCTGGAGGATTGACTCTAGAAGGATCTCCAAGTGCAGGGAAACGGAGAATGGTAGGCATGGAGTCAATGGCGGCGCCTTTGATTTGGAGTGAAGCGAAGATGAAAGCTCAAGCCATCAATATAGGTCAAGGGAATCACCATCTTGGAATAACTAGGTATGGCATGTAA 918 0.4542 MDSTTMYTRLIHPHEGIVGQDDLQSGVAAVNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGMTGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGASAIDTDSQKFQGIENKAPRAPLVDPLGFYSLPSTEAAGVNVPEDEIPPSLPPQRADCSTESCLTSHESSGGLTLEGSPSAGKRRMVGMESMAAPLIWSEAKMKAQAINIGQGNHHLGITRYGM* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3910 305 Gene3D - 44 101 - -
Psa1g3910 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 99 IPR006447 GO:0003677
Psa1g3910 305 MobiDBLite consensus disorder prediction 231 263 - -
Psa1g3910 305 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Psa1g3910 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 305 IPR044848 GO:0003700
Psa1g3910 305 MobiDBLite consensus disorder prediction 236 257 - -
Psa1g3910 305 Pfam MYB-CC type transfactor, LHEQLE motif 129 174 IPR025756 -
Psa1g3910 305 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Psa1g3910 305 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3910 Psa-Chr1 322301747 322306348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3910 29 247 G2-like Transcription Factor Family AT3G24120 44.033 3.49e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g3910 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3910 - - gmx:100786397 522.316