Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3909 ATGTATCATCCAAAGAATGTTCCTAATTCGAGTTTAATTGGAAGCAATTCATTAGTTCATGATCAGAACATAGATTGTGGTAGGAGCGGAATGGATCCAGGTAGTGGAGGAAACAGTCTTGCCAACAACTCAAAACAACGTTTGCGCTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTAGCTCAACTTGGCGGGCCTGATCGTGCCACGCCTAAAGGGGTTCTCAGAGTTATGGGTGTACAAGGATTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCTGACTCCTCATCCGATGAAGGGAAAAAAGCCGACAAGAAAGAAACGGGGGACATGCTTTCCAACCTAGATGGTTCATCGGGAATGCAAATTAATGAAGCACTAAAACTTCAAATGGAGGTGCAGAAGCGTCTACATGAACAATTAGAGGTGCAGAGACAGCTACAGTTAAGGATAGAAGCTCAGGGAAAATATTTGAAAAAGATAATCGAAGAGCAACAGCGACTCAGTGGGGTTCTTTCAGAAGCACCTGGCTCTGGTATTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAACTCGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAAAGATCACACACCAGCAAAGAGTCTTTCAGTTGAATCTTTTTCATCTCACCACGAACCGATGACGCCAGATTCCGGTTGCCAAGTCGGTTCTCCCGCTGACAGTCCTAACGGCGAGAGATCAACTAAAAAGCAACGAGTAAGTGTGGAAGGAGAGTATTCAAATCCAGACATGATGCTTCCACATCAGATACTGGAGTCAAGCATGCCGTCATACCAGCAACCTGTTTTCCTTAGCCGAGATCACTTTGATTCTGATTTAGGAATGTCTACAAGAAGTGGCGAGGAATTGGACAAGCTTGGTGGCAGGAATATGTGA 975 0.4492 MYHPKNVPNSSLIGSNSLVHDQNIDCGRSGMDPGSGGNSLANNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQINEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPGSGIAAPTPGDMCQQELDNKTEPATPDPEKAAKDHTPAKSLSVESFSSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEGEYSNPDMMLPHQILESSMPSYQQPVFLSRDHFDSDLGMSTRSGEELDKLGGRNM* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3909 324 MobiDBLite consensus disorder prediction 304 324 - -
Psa1g3909 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Psa1g3909 324 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Psa1g3909 324 MobiDBLite consensus disorder prediction 203 286 - -
Psa1g3909 324 Coils Coil 135 155 - -
Psa1g3909 324 MobiDBLite consensus disorder prediction 209 224 - -
Psa1g3909 324 Gene3D - 44 103 - -
Psa1g3909 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 316 IPR044848 GO:0003700
Psa1g3909 324 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Psa1g3909 324 MobiDBLite consensus disorder prediction 302 324 - -
Psa1g3909 324 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Psa1g3909 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 316 - -
Psa1g3909 324 MobiDBLite consensus disorder prediction 227 257 - -
Psa1g3909 324 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3909 Psa-Chr1 322286551 322289021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3909 80 324 G2-like Transcription Factor Family AT2G01060 61.868 1.18e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g3909 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3909 - - gmx:100786925 524.628