Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3893 ATGGCTAACCAAAACAGAGAAGAGGTGGTATGCGTTACCGGAGCAAACGGTTTCATCGGTTCATGGCTAGTTCAAACCTTATTACACAAACAAAACCCGCACTACACAATCCACGCCACAATCTTCCCTGGTTCCGATCCTTCCCATCTCTTCACACTCCATCCCGAAGCACAATCCCGCATCACCATCTTCCCCGTCAACATCCTCGACTCCACCGCCGTCTCAACCGCCATTCAAAACTGCTCCGGCGTCTTCCACGTCGCATCTCCCTGCACTCTCGAAGACCCAACCGATCCACAAAAAGAACTTCTAGAACCCGCTGTCCACGGAACCCTAAACGTCCTAGAAGCATCAAAACGCGCGGGAGTGAAGCGCGTGGTACTCACCTCCTCCATTTCAGCCATGATTCCAAACCCTAACTGGCCGGAAAACAAACCGATCGACGAATCTTCCTGGACGGACGTTGAGTACTGTTCGTCGAGAGGGAAGTGGTATCCGGTATCGAAAACGAAGGCGGAGAAAGCCGCGTGGGAGTTTCGTGAGAAGCACGACGGGGACGGTGGTATCGACGTGGTGGCGATTCATCCGGGGACTTGTTTGGGACCCTTGCTTCAGAACGAGATGAATGCGAGTTCTGCTGTGTTGCAGAGGTTGATGATGGGGTTCAAGGATACACAGGAGTGTTATTGGTTAGGTGCTGTTCATGTTAAAGACGTTGCTAGTGCTCATGTTTTGGTTTATGAAACTCCAACTGCTGCTGGTAGATATCTTTGTACTAATGGTATCTATCAGTTTTCTAGTTTTGCTAAAATTGTCTCTCAATTGTACCCTCATTTTCCTATTCACAGTTTCCCGGATGAAACTCAACCTGGTTTGACACAATGTAAAGATGCAGCAAAGAGGCTCATAGACTTGGGATTAATCTCTTCTCTCGAGCAAAAAATAGAACTCAACTCCACCAAAGCTCAACTAGCTGCAAGCCACACAATCTTATCCGAGCTGCATCAGAGACTCAACTCAACTAACTTACTTGTCCAGGCTCTGCTTATTGATCTTACCCGCGAACAAGAAAAGCAACCCAACCTTGCAGATGAGAATCCTTTGACTGTGAATCTCAGAAACGATGATTCCACTATATCTGATGAGCTTAATGTTGCACTTGGCCCTCACAAGCTCCCTTTCGGATACTCGCCAAAGATCGGTTCAGGTGAAATTCACATGCCTATTGGTGAAGCCTGTTTGAGGCTACATGAGGAGTTAAAGCAATATATGACATATGACATTGGAGGAGAATGTCCTGGAGATGATGTACTTGCGCAAGGACTCATGCTCAAAGGATGCGAACCATTACCTCGTCGGAGATGCCACACGAAGTCTCCTACAAACTATGTAGAGCCAACGCCTTTGCCGGGTAGTCTTTGGACGATTCCACCGGACACAAGCATCATATGGGAGTCCTATAGTTGTAAAAGCTATCGATGTCTTATTGATAGAAAGAATGAGCCAGGTTCTTATGACTGCAAAGGTTGCTTTGACTTAGAGAAAGAAGAGAAGATTAAGTGGATCTTTGATGATGGTGGACTTGATTTTGGAATAGACCAAGTTCTTGCAGCAAAAACAGCCGGAACCATTCGGATTGGACTTGACATAGGTGGCGGAACCGGAACATTTGCAGCTAGAATGAAGGAGCGAAACGTGACGATCATTACAAGTACACTGAATTTGGATGGTCCATTCAACAACATGGTTGCATCAAGAGGTTTGATACCAATGGTGTTGAGGCCAGGAGGTCTATTTTGGCTTGACCATTTCTTCTGCTTTGGTTCACAGTTCAACAAAACTTACGTGCCAATGTTCGATCAGGTTGGATTCAATAAACTGCGATGGCATGTTGAAGTCAAACCTGATCCCGCGGTTCGGAGGAATGTATGGTACATTTCAGCTCTGATGGAAAAACCAATGTTTTGA 1968 0.4634 MANQNREEVVCVTGANGFIGSWLVQTLLHKQNPHYTIHATIFPGSDPSHLFTLHPEAQSRITIFPVNILDSTAVSTAIQNCSGVFHVASPCTLEDPTDPQKELLEPAVHGTLNVLEASKRAGVKRVVLTSSISAMIPNPNWPENKPIDESSWTDVEYCSSRGKWYPVSKTKAEKAAWEFREKHDGDGGIDVVAIHPGTCLGPLLQNEMNASSAVLQRLMMGFKDTQECYWLGAVHVKDVASAHVLVYETPTAAGRYLCTNGIYQFSSFAKIVSQLYPHFPIHSFPDETQPGLTQCKDAAKRLIDLGLISSLEQKIELNSTKAQLAASHTILSELHQRLNSTNLLVQALLIDLTREQEKQPNLADENPLTVNLRNDDSTISDELNVALGPHKLPFGYSPKIGSGEIHMPIGEACLRLHEELKQYMTYDIGGECPGDDVLAQGLMLKGCEPLPRRRCHTKSPTNYVEPTPLPGSLWTIPPDTSIIWESYSCKSYRCLIDRKNEPGSYDCKGCFDLEKEEKIKWIFDDGGLDFGIDQVLAAKTAGTIRIGLDIGGGTGTFAARMKERNVTIITSTLNLDGPFNNMVASRGLIPMVLRPGGLFWLDHFFCFGSQFNKTYVPMFDQVGFNKLRWHVEVKPDPAVRRNVWYISALMEKPMF* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3893 655 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 592 654 - -
Psa1g3893 655 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 313 592 - -
Psa1g3893 655 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 313 592 - -
Psa1g3893 655 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 592 654 - -
Psa1g3893 655 CDD FR_SDR_e 10 307 - -
Psa1g3893 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 287 IPR036291 -
Psa1g3893 655 Gene3D - 1 332 - -
Psa1g3893 655 Pfam NAD dependent epimerase/dehydratase family 10 252 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3893 Psa-Chr1 321626035 321629012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3893 7 308 Monolignol Biosynthesis Gene Families AT2G02400 64.901 2.44e-144 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3893 - - gmx:102664598 535.798