Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3892 ATGGGTGAAAGAATTCTAGTGTTCCTACTCTTCCTTTTCTGTTATTTCTTTGTTGTTGTGGTAACAAAAACATCAAATGAGGATTACCTTGCACTTTCGGCTATAAAGTATGAGTGGAATAATACACCGCCGAGTTGGGAGCGCTCGCAGGATCCTTGTGGTGGACGTTGGGAGGGCATTGAGTGCTCCAATTCGCGTGTTATCACCATATCATTGTCAAGCATGGATTTGTCTGGCCAGCTTTCATCAGAAATTGGATCACTTTCTGAATTGCAGATTTTGGTTCTGTCCTACAATAAGGATTTAACAGGACCGCTTCCCGCTGAAATCGGAAAACTGAAAAAACTGAAAAATTTACAGCTTATTAACTGTGGCTTCAGTGGTCCTATCCCAGATACAATAGGAAATCTACAACAGCTTGTATTCCTATCTTTGAATTCTAATAGATTTAGTGGAACAATTCCAGCTTCTATTGGTAATCTCTCAAGTGTTAATTGGCTAGACTTAGCAGAAAACCAGCTTCAGGGTCCTATCCCAATATCTAGTGGAACTACTCCCGGTCTCGATATGCTGCATAAAACAAAACACTTTCATTTTGGGAAGAATAAGCTTTCGGGAAATATTCCAGCTCAACTTTTTAGTTCTGAAATGTCATTGATACATGTGCTTTTTGAAAGCAACAAATTCACTGGCAGCATTCCATCTACACTTGGACTTGTGAAGACACTTGAAGTTGTCCGCTTGGATAACAATTCGTTAAGTGGACCTGTGCCTCAAAACATCAACAACCTTACAAACGTTAGACAATTGTTCCTTTCCTCGAATCACCTATCCGGTTCCCTGCCAAACCTTTCTGGAATGAACGTCCTCAGTTACCTGGATATGAGCTATAACCAATTCGATCAATCAGATTTTCCATCATGGCTATCAAATCTTCAGTCTCTAACAACAATAATGATGGAGAAAACACAACTTCAAGGACCTATTCCGGTTTCTTTGTTCAGCCTGGTTCAGTTACAGACAGTGATGCTGAAAAACAACCAACTGAATGGAACTTTAGATATTGGCACGACCATTAGTGACCAACTGGGAGTCATTGATTTGCAGACTAATTTTATTGAAAAATTTGAACCAAAAATCGATGTCTCTAAAGTGGAGATAACACTCGTAGAAAATCCTTATTGCGATGAAGCAGTGAAACAAACCTACTGCTCCATTGCAAAAAACAATGACTCATATACAACGCCGATAAATAACTGTGTGCCAGTTGCCTGCATCTCGAAGCAGATATTAAGCCCGAATTGCAAATGTGCATACCCTTATACAGGAACTTTAACTCTTAGAGCTCCTTCTTTCTCTGACTTGGGAAACAAGACAGTGTTTGATATGCTAGGTTTTACTCTTATGGAGTCTTTTAGAAATCACGACAAACCTGTGGATTCAGTTTCTTTAAGCAATCCAAGGAAGAATGTGTATCAGTATCTTGATTTGAGTTTAGAAATATTTCCATCGGACCAAGATTCTTTCAACAGAACCGGTATTTCTGGCATAGGCTTTATGCTTAGCAACCAAACATACAAGCCCCGTGCTGACATTTTTGGACCATTTTATTTCATTGCTGATGAGTATGATCATTATCTGAATGATTCAGTAATAGAAGAAGGTCCTGTGAAATCTAGTAAATCCTCAAATATTGGCATCATCGCTGGAGGTGCTATTGGTGGTTGTGTCCTGGTTGTGTTATTACTCCTTGCAGTTGTTTACGGCTTCCGCCAAAAGAACAAGGCAAAACGAGAAGCTAAGAAAAGCAGTCTTTTTCAACAATGGGGCCCTGATGAGAGCAATAGCAGCATCCCACAGTTGAAAGGTGCGAGGCGCTTCAGTTTCGAAGAGATTCAGAACTGCACCAAAAAGTTTTCACAGCTCAATTATGTAGGATCTGGGGGTTATGGGAAGGTTTATAGGGGAACTCTTCTCAACGGACAACTAATTGCAGTGAAACGAGCTCAAAAGGAATCAATCCAAGGAGGGTTGGAATTCAAAACAGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTGAGCCTTATTGGTTTCTGCTTTGAGCAAGGCGAACAAATATTGGTTTATGAGTATGTTATAAATGGTACTTTGACAGATGCTCTTTCAGGGAAGTCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCCCTTGGTGCGGCTAGGGGGTTGGACTATCTTCATGAACATGCTAATCCTCCTATCATACATAGAGACGTCAAATCGACAAACATTTTACTCGACGAACGCTTGAATGCTAAAGTATCTGATTTTGGTCTCTCCAAGCCTTTGGGTGATGGTGCAAAAGGTTATATTACAACTCAAGTCAAAGGGACAATGGGCTACTTGGATCCAGAATATTACATGACACAGCAATTGACAGAGAAAAGTGATGTTTATAGCTTTGGAGTATTAATGTTGGAGTTGATAACTGCAAGAAGACCAATAGAAAGAGGGAAATATATCGTGAAAGTGGTTAAGAATGCGATTGACAAGACAAAAGAGTTAAACGGTCTTACGGAAATCCTTGATCCTGTCATTGATTTTAAGGCATCATTGAACAGTTTTGAAAAATTTATAGATCTTACGATGAAATGTGTTGAAGAGTCAAGTTCAAATAGGCCTTCAATGAACTATGCACTGAAAGAAATTGAAAACATGTTACTGTTGGCTGGCACAAACCCTAATGCTGAATCAGCTTCTACTTCATCTAGCTATAATGCTAGTGGAAATTCTATGCATCCTTATGAAAATGAGTATTTTGATTCAAGTGTGGTACTTCCACGTGCGTAA 2865 0.3941 MGERILVFLLFLFCYFFVVVVTKTSNEDYLALSAIKYEWNNTPPSWERSQDPCGGRWEGIECSNSRVITISLSSMDLSGQLSSEIGSLSELQILVLSYNKDLTGPLPAEIGKLKKLKNLQLINCGFSGPIPDTIGNLQQLVFLSLNSNRFSGTIPASIGNLSSVNWLDLAENQLQGPIPISSGTTPGLDMLHKTKHFHFGKNKLSGNIPAQLFSSEMSLIHVLFESNKFTGSIPSTLGLVKTLEVVRLDNNSLSGPVPQNINNLTNVRQLFLSSNHLSGSLPNLSGMNVLSYLDMSYNQFDQSDFPSWLSNLQSLTTIMMEKTQLQGPIPVSLFSLVQLQTVMLKNNQLNGTLDIGTTISDQLGVIDLQTNFIEKFEPKIDVSKVEITLVENPYCDEAVKQTYCSIAKNNDSYTTPINNCVPVACISKQILSPNCKCAYPYTGTLTLRAPSFSDLGNKTVFDMLGFTLMESFRNHDKPVDSVSLSNPRKNVYQYLDLSLEIFPSDQDSFNRTGISGIGFMLSNQTYKPRADIFGPFYFIADEYDHYLNDSVIEEGPVKSSKSSNIGIIAGGAIGGCVLVVLLLLAVVYGFRQKNKAKREAKKSSLFQQWGPDESNSSIPQLKGARRFSFEEIQNCTKKFSQLNYVGSGGYGKVYRGTLLNGQLIAVKRAQKESIQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQILVYEYVINGTLTDALSGKSGIRLDWIRRLKIALGAARGLDYLHEHANPPIIHRDVKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKNAIDKTKELNGLTEILDPVIDFKASLNSFEKFIDLTMKCVEESSSNRPSMNYALKEIENMLLLAGTNPNAESASTSSSYNASGNSMHPYENEYFDSSVVLPRA* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3892 954 SMART serkin_6 639 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3892 954 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Psa1g3892 954 Pfam Protein kinase domain 640 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3892 954 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 944 - -
Psa1g3892 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Psa1g3892 954 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 944 - -
Psa1g3892 954 ProSiteProfiles Protein kinase domain profile. 639 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3892 954 Gene3D Phosphorylase Kinase; domain 1 611 714 - -
Psa1g3892 954 SUPERFAMILY L domain-like 36 383 - -
Psa1g3892 954 Gene3D Ribonuclease Inhibitor 184 416 IPR032675 -
Psa1g3892 954 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524
Psa1g3892 954 SUPERFAMILY Protein kinase-like (PK-like) 609 906 IPR011009 -
Psa1g3892 954 CDD STKc_IRAK 645 911 - -
Psa1g3892 954 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Psa1g3892 954 Gene3D Transferase(Phosphotransferase) domain 1 716 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3892 Psa-Chr1 321625676 321634803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3892 1 954 Receptor kinase-like Gene Family AT5G49760 54.688 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Psa1g3892 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3892 - - gmx:100782366 1386.32