Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3886 ATGAATGACAATGCTGTGTGTTCTTCGAATGATAAGGGCTTGTTGCTAACTACTAATCTCGACATCACGATAGATGAGGGATCTTTGCACAGTGAGCAACTACTTGAAGTTGAGGGCAAAGAGCTCGAGAATGACTGTAGTCAATTGTTTGAGATTGATGGATGTGAACATGAGAATGGAAGGGATGAAAATGAAACAGCTGTAGTTGACAGTAATAGTAGAGAACATCGAGGAAAAGACTTCCAGTCACCTGTTGTGGGAATGGAGTTTGAAACTTATGATGATGCCTACAACTATTATAACAGCTATGCTAAAGAAATTGGATTTGCTATACGGGTTAAATCATCTTGGGCCAAACGTAACAGTAAAGAGAAGCGCGGTGCTGTCTTGTGCTGTAACTGTGAGGGTTTCAAAACAATTAAAGAAGCTAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTGATAGGTGGAGGGTTGACGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAGAGAGCACAGAACTCTAAATCACATAAGAGGATGGACAGTGGGGCCAAAAGAAAATTTGAGCCAACTCTAGATGTTGAAGTGAGGACAATCAAGTTATATCGAATGCCAAATGCAGATGCTTCTGGTTATGGGAGCTCAAATTCTAATGAAGGAGGAGCTAGCAACAATGTTAAATTTTCCAGGCGTTTGAAACTAAAAAAAGGTGATGCAGAACTTATTTCTAATTACTTCTGTCAGCGTCAACTGGATGTGGTCTGCTTGCAGATGAGACATTCGACACATATATTTGGTTATTTAGGGCATGGATTACTTGTATCTCTGGTCGCCCTCCACAAACTATTGTCACAAATCAATTTTCAGGAATATGAGGAATTTCAAATGGCGCTAACAAAAGTGATATATGACCCTAAAACAGTAGATGAATTTGAAAGGGAATGGGATGCTCTGACCCAACATTTTAGAACAAGAAATCATGAAAAGCTTCAAAGCTTGCACGAGGAACGAGAGCTCTGGGCTCCAGTATACTCCAAGGACACAATTTTTGCTGGAATTTCTGATTATGAAAACGGCGAGTCTGTGGTTCCCTTTTTCAAGGGTCACTTGCATCATCAAACTTCGTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAACAAAAGAAGCAAAACACTGAAGCTCTTGATGATTTGGAGTCACACAATTCAAGCCCATTACTGAAAACAAGATGCTTCTACGAGCTGCAACTCTCTAAATTGTACACAAATGCAATATTCAGGAAGTTCCAAGATGAGGTGGTGATGATGTCCTCCTGTTTCTGCGTCTCACAAATTCAAACAAATGAGTCGATAGTGACATACATGGTAAAAGAACATCAAGTGGAAGAATCTGTAAGAGATGATAGGCATTTTGAAGTCATGTATGATAAAGCGGTAGCCGAAGTACGTTGCATATGTAGTTGCTTTAACTTCAAAGGCTACCTATGCAGGCATGCCTTGTATATTCTTAATTACAATGGCGTGGAGGAAATTCCATGTCAATATATTTTGTCAAGATGGAGGAAAGATTGTAAGCGATTGTATGTACCACATCTCAGGTCAGACGATGTTGACATTACCAACCCAGTTCAGTGTTTTGATCATTTATACAAACGTGCTATGCAAGTAGTTGAAGAAGGCATGATATCTCAAAACCATTACATGGCTTCTTGGCAGGCATTTAAAGAGTCTTTGAATAAGATTCGTTGTGTAGCAGACAAGATTGAATAA 1818 0.39 MNDNAVCSSNDKGLLLTTNLDITIDEGSLHSEQLLEVEGKELENDCSQLFEIDGCEHENGRDENETAVVDSNSREHRGKDFQSPVVGMEFETYDDAYNYYNSYAKEIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLVESDRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSGAKRKFEPTLDVEVRTIKLYRMPNADASGYGSSNSNEGGASNNVKFSRRLKLKKGDAELISNYFCQRQLDVVCLQMRHSTHIFGYLGHGLLVSLVALHKLLSQINFQEYEEFQMALTKVIYDPKTVDEFEREWDALTQHFRTRNHEKLQSLHEERELWAPVYSKDTIFAGISDYENGESVVPFFKGHLHHQTSLKEFFEIYELVQQKKQNTEALDDLESHNSSPLLKTRCFYELQLSKLYTNAIFRKFQDEVVMMSSCFCVSQIQTNESIVTYMVKEHQVEESVRDDRHFEVMYDKAVAEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDCKRLYVPHLRSDDVDITNPVQCFDHLYKRAMQVVEEGMISQNHYMASWQAFKESLNKIRCVADKIE* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3886 605 MobiDBLite consensus disorder prediction 179 199 - -
Psa1g3886 605 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 266 IPR031052 GO:0006355
Psa1g3886 605 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 278 600 IPR031052 GO:0006355
Psa1g3886 605 ProSiteProfiles Zinc finger SWIM-type profile. 487 523 IPR007527 GO:0008270
Psa1g3886 605 SMART 26again6 498 525 IPR006564 GO:0008270
Psa1g3886 605 Pfam FAR1 DNA-binding domain 98 182 IPR004330 -
Psa1g3886 605 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 31 266 - -
Psa1g3886 605 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 278 600 - -
Psa1g3886 605 Pfam SWIM zinc finger 492 516 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3886 Psa-Chr1 321325418 321329385 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa1g3886 FAR1 7.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3886 K17604 - gmx:100796448 528.094