Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3884 ATGTCGGAGTTGGAGAAGGAACATCTTGTTACACTGGGCGACGACTCTCATTTTCTGGAAGAAGAAGACTTAAAGATGGATGATGCTTCTCTGTGTTGCGAACAATTACCGGATGGAGAATGCATTGAGATTCTGAAAGATGAAGATGATGTACTAATTGGATTAGATTGTCAAAATGATATTTCGGAAGGAAGAAAGGAATTTCTCGCACCGGCTGTTGGAATGGAGTTTGAGTCATATGATGATGCTTACAATTATTATATTTGCTATGCCAAAGAGGTGGGGTTTTGTGTGAGGGTGAAGAATTCATGGTTCAAGAGAAATAGCAAAGAAAAATACGGTGCAGTGCTTTGTTGTAGCAGCCAAGGTTTCAAAAGAATAAAAGATGTTAACAATTTGAGAAAAGAGACTAGAACTGGTTGTACGGCTATGATAAGGATGAGGTTAGTGGAGTCTCAGAGATGGAGGATACGCGAGGTAACCCTTGAACATAACCACATCTTAGGTGCTAAGATTCATAAATCGGTTAGAAAGATAGGAACTGGAACTAAAAGCAAGTTGTTACCTTGTTCTGATGCTCAAGTGCAAACAATAAAGTTATATCGTGCACTTGTGATAGATGCAGGTGATGGTAATTTAAACTCCAATGCAAGAGACGAAAAAACTTTCTTTGAATATTCTAATGAGTTGAACCTAAGAAAAGGGGACACGCAGGCTATTTATAATTTCCTGTGCCGATGTTCTCCTCAAACTATTATTACAGATAGGTGCAAGGCTTTGCAGAGTGCAATTGCGGAAAATTTTCCCAAATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAACTGGGAGGGTTGCGCAATTACGATGCAATTAGAAAAGCACTAGTTAGAGCCGTTTATGAGACATTAAAAGTGATTGAATTTGAGGCAGCATGGGGATTTATAATTCAACGTTTCGGACTTAGTGACCACGAGTGGCTTCGTTCCCTTTATCAAGACCGAGTTCATTGGGCACCGGTATTTTTAAAGGACAAATTTTTTGGTGGAATGGCTGCGACACGCTCTGGTGAGAACCTTACTCCATTTTTTGATAAATATGTGCACAAACAGACTCCATTGAAAGAGTTTCTTGACAAGTATGAACTAGCTCTTCATAAAAAATACATGGAAGAATCTTTAGCAGATATTGAATCAAGAAGCTCAAGCCCCTTGCTGAAAACCAAATGTTCTTTTGAACTGCAGCTCTCTAAAATGTACACAAGAGAAATATTCAGGAAGTTCCAACTTGAAGTGGGAGAAATGTTCTCTTGTTTCGGGACAACTCAATTACACGTCGACGGTCCCATCATAATCTTCTTGGTCAAAGAGCATGTTTTGGTTGAGGGAAACAAACGGGAGATTAAGGATTTCGAAGTTTTGTACAGTAGATCAGTAGGTGAAGTTCGTTGTATATGTTGTTGCTTTAATTTTTATGGATATTTATGCCGGCATGCATTGTGTGTACTCAATTTTAATGGGGTGGAAGAGATTCCTCCTAAGTACATTCTTTCAAGGTGGAAGAAAGATTACAAGCGCCTTTATATTTCTGATCACAACTCTGATAGTATTGGCAGTATTCAGTTGTGTGATAAGTTATTTAAAAGTGTCTTACAAGTTGTGGAGGAGGGAATGATTTCTGGAGAGCATTACAATGTAACGTTGCAGGCTTTTGAAGAATCGCTTAATAAGGGCCCATTGTTATCAAATAGCAGCGCCATGACCGCTATGGCAAATATACATGGCGGTTTTTGGGCTCGCCGCAATGGTTCGGCCGATATTGCGGTGAAGTGTAGAGAGCAGCATCACTCCCATTCAAAATTTCTTCTCAGCACTCAGTTTCCTTCTATAGATGAGGGATCTCCAAACAGTGAGCAACCATTTGAGGCTGAGGATGAGGGCTACGAGCTTGTGAATGACCGTAAACAAGTGTTTGAGATGGATGGAAGTGAACATGAAGATAGAAGGGATGAAACTGCATTAGTTAGTAAAGAATCTCGAGGAAAAGACTGCCGCACACTTGTTGTGAGAATGTATTTTGACACTTATGATGATGCGTACAACTTCAAATAA 2127 0.394 MSELEKEHLVTLGDDSHFLEEEDLKMDDASLCCEQLPDGECIEILKDEDDVLIGLDCQNDISEGRKEFLAPAVGMEFESYDDAYNYYICYAKEVGFCVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVNNLRKETRTGCTAMIRMRLVESQRWRIREVTLEHNHILGAKIHKSVRKIGTGTKSKLLPCSDAQVQTIKLYRALVIDAGDGNLNSNARDEKTFFEYSNELNLRKGDTQAIYNFLCRCSPQTIITDRCKALQSAIAENFPKSHHCFGLSLIMKKVPEKLGGLRNYDAIRKALVRAVYETLKVIEFEAAWGFIIQRFGLSDHEWLRSLYQDRVHWAPVFLKDKFFGGMAATRSGENLTPFFDKYVHKQTPLKEFLDKYELALHKKYMEESLADIESRSSSPLLKTKCSFELQLSKMYTREIFRKFQLEVGEMFSCFGTTQLHVDGPIIIFLVKEHVLVEGNKREIKDFEVLYSRSVGEVRCICCCFNFYGYLCRHALCVLNFNGVEEIPPKYILSRWKKDYKRLYISDHNSDSIGSIQLCDKLFKSVLQVVEEGMISGEHYNVTLQAFEESLNKGPLLSNSSAMTAMANIHGGFWARRNGSADIAVKCREQHHSHSKFLLSTQFPSIDEGSPNSEQPFEAEDEGYELVNDRKQVFEMDGSEHEDRRDETALVSKESRGKDCRTLVVRMYFDTYDDAYNFK* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3884 708 Pfam FAR1 DNA-binding domain 85 168 IPR004330 -
Psa1g3884 708 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 44 247 - -
Psa1g3884 708 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 247 582 - -
Psa1g3884 708 SMART 26again6 487 514 IPR006564 GO:0008270
Psa1g3884 708 ProSiteProfiles Zinc finger SWIM-type profile. 476 512 IPR007527 GO:0008270
Psa1g3884 708 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 247 IPR031052 GO:0006355
Psa1g3884 708 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 247 582 IPR031052 GO:0006355
Psa1g3884 708 Pfam MULE transposase domain 247 283 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3884 Psa-Chr1 321282098 321288518 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa1g3884 FAR1 2.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3884 - K17604 gmx:100796448 643.269