Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3876 ATGGAGGAGCAAGCTTTTTTAGGTTATGAACCATTTGTTAATGTTGGAAGAGATGAGGAAGAAGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAAGCAGAAAGAGAACAACAACTAGAAGAAGAATGGAAAGAAACTGAGGAGACAGTGGTGGTGGAAGGGTTGAAAGAAGAGCTTGATGAATTTTCAGTAAGAATGTACTTTAAGGGTTTGTCAATAGCTGGGGTTGAAAATTCAACTACAGGGTTTTCTGGAATTGGAGTGTACATGGAAAGATCATCGAGTTTTTCTCCTATAAGGGTGCAGAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTGGAAGCTTTGCAGAACAAGATCCGTAGGGTTTATGCTTTCACAGATTCTGAATTGTTGTATAAGACAACATTTGAGAAAAATTTGGACATGCCGCTTTTGATGGCATTGAAAGAAAGGATTCTGGAACATGCAGATAATTTTGAAACTTTTGATCTGAAGCTTATATCAAGCACTGATCTTGAGCAGCCATTGCAGTTAGCCAAAGTAGCTATGGGACTTGTCACTTTTCCAGTAAATGAAAAAACATCACTTGAGAATTGTTCTATTTGTTGCGATGAGAAGCCAGTGCCAATGATGATTACCTTGAAATGTTCACACACTTTCTGTTCGCATTGTTTGAGGTCCTATGCTGATGGTAAACTGCAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGTATCTCGGCACCCGAGTGCAAGACTTTTCTTCCATTCACCTCCTTTGAATCTCTCGAGAAAGCCCTTTCAGAAGCAAATATTGGTCAGTCAGAAAGATTTTATTGTCCGTTTCCGAATTGCTCAGTTCTCCTTGATCCTTGCGAGTGTTTGTCGGCAATGGACGGTTCATCTAGTCAGTCAGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATATGTGTGGATTGCGGTGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAATATCAGCATTTGCCAGAGGAGGAGAGAGATGCTTCTGACATTAGCTTGCATCGTCTTGCACAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAATTCTGCTATTCTTGTGGCGCAGAATACAGGAATGGCCAACAAACATGTCAATGTGCATTTTGGGACGAAGACAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGGCATGGGAGACTTCTATGATCATGGATGCGTACTCAGATCAAGAACGGTCACAACTCGCGCTTATACAACGGTTCCTTGACGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCCTCCTCCTCAATGTACAGAATCCTTTGTAGACCCCTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAACTACTATGAAGATTACATGCAATAA 1566 0.417 MEEQAFLGYEPFVNVGRDEEEEDEFCSCCEDEAEREQQLEEEWKETEETVVVEGLKEELDEFSVRMYFKGLSIAGVENSTTGFSGIGVYMERSSSFSPIRVQKRLDFYAEEPMVDYLALMDGLLEALQNKIRRVYAFTDSELLYKTTFEKNLDMPLLMALKERILEHADNFETFDLKLISSTDLEQPLQLAKVAMGLVTFPVNEKTSLENCSICCDEKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISAPECKTFLPFTSFESLEKALSEANIGQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMSCEEYQHLPEEERDASDISLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRNGQQTCQCAFWDEDSLTNSLQESEQWAWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3876 521 Coils Coil 29 49 - -
Psa1g3876 521 Pfam IBR domain, a half RING-finger domain 284 350 IPR002867 -
Psa1g3876 521 Pfam IBR domain, a half RING-finger domain 369 419 IPR002867 -
Psa1g3876 521 Gene3D - 348 464 - -
Psa1g3876 521 SUPERFAMILY RING/U-box 363 427 - -
Psa1g3876 521 Pfam Reverse transcriptase-like 80 180 IPR002156 GO:0003676|GO:0004523
Psa1g3876 521 SMART ibrneu5 278 350 IPR002867 -
Psa1g3876 521 SMART ibrneu5 360 419 IPR002867 -
Psa1g3876 521 ProSiteProfiles Zinc finger RING-type profile. 211 255 IPR001841 -
Psa1g3876 521 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Psa1g3876 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 290 IPR013083 -
Psa1g3876 521 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 520 IPR031127 GO:0004842|GO:0016567
Psa1g3876 521 ProSiteProfiles TRIAD supradomain profile. 207 425 IPR044066 -
Psa1g3876 521 SUPERFAMILY RING/U-box 207 285 - -
Psa1g3876 521 Gene3D - 64 197 IPR036397 GO:0003676
Psa1g3876 521 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3876 Psa-Chr1 320782241 320790371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3876 63 410 C3H Transcription Factor Family AT2G19610 26.519 1.84e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3876 - - mtr:MTR_2g028870 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3876 1 320782241 320790371 Psa1g3876 1 320782241 320790371 ECH