Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3874 ATGGAATCCGGTGACGGTTACAGCGGACGAGGAACTCAACAACCGAACGACGAGGTGATTCTACAACCAGAATGGAGACGCCGAACTGCCTCAACCGGAGGAGAACAAAACCTTACTCTCCAACCAGAATGGAGGCGAGGTAGGTCAACAGCAACAGCTCTCCCTTCTCCTTCCCATGCCGGCGATGAAGCTCAGAAGAAGGATGGTGAGCAGAAAAAGGAGGTTATCCTTCAACCAGAATGGAGACGATCAAGGTCCACTACTACTACTGCCACTGCATATCCGTGGAATCAAAACCAAAATTATGGTGTAAGAAAACCATTTGGTTCGAGTTCGAGTTCTAGTGGTGTTCAAAGAAGTAGAAACATTGATGAATCTTGGCGAAATGCTCCACCGCTAGATTATGTAGTTCCTAAACTGGAAAGTCTACAAATATCGAAAGATTTAGCTGCATCATCATTTTCACTTGAAAGAAAGGATAAAGCTTTGCCTATTCGGAGACCTGACCGTGGTGGCACATTATCGATTCTTACGAGCAGACTTTGTGTCAATCATTTTCTTTTGAAGTTCAATCCAGAGAGTATAATATTTCATTACAATGTTAGCGTGAAACCTAATTTTTCCTCAAAAGTTGGCCAGCCTCGGAAGTTGTCTAATAATGACCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCCGAGAGGTTCCCCTTGGACATGACTGCGCATGACGGTGCCAAAAATATCTTTAGTGCGGTGCAGTTACCAGAAGAGACTGTTAATGTGGTGGTCTTTGATGGAGAGGATGAAAAGACCACTTCATATAGTGTTACCATAACACTTCTTAATAAACTCAGACTTCACAAGTTAATGGACTATCTTTGTGGGCATTCACTCTCTCTTCCTAGGGATATTTTACAAGGAATGGATGTCGTGGTAAAAGAGAATCCTGCTAGGCGCACAATTTCTGTGGGACGGCACTTCTATCCCACAAATCCTCCTTTAGTAATGAAGGAACTTCGCCCTGGAATAATTGCGGTCGGGGGGTTTCAGCATAGTTTAAAACCTACTTCTCAGGGTCTGTCCTTGTGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTCCGTCTTGGATTTCTTGCATGAGCGTATCAATGGCTTTAACTTGGGTGAATTTCAAAAGTTCAGGAAATACGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGGAAGTCCAAACAGAAATATATTATTGCCGGATTAACACCTACGGTTACAAGGCATGTCACTTTCCCCATTGACTATACTAAGAGCTGGAAAATTGAAAAGGATGTTAATCTTCTTAGCTTTTTTAATGAGAAATATGACAAGGACATTGTACACAAAGACATTCCTTGTTTAGATTTAGGGAAAGGAAACAGGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAAGAGCGTTTGGATGGTGCTTCAGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCGAGCGAGAGGCAGAGTGCTATACAGAAGATGGTGCAATCGAGTGATGGACCTTGCGGCGGTGATATTATTCAAAACTTTGGAATGTCAGTCAATATGACCATGACAACCATTCTAGGACGTGTAATTGGACCCCCGGAATTGAAGTTGGGCGATCCAAATGGCAAGATTGTCAAGATAACAGTCGATCTAGATAAATGTCATTGGAACCTTGCCGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCGTTGGGCCATTCTTGATTTCACCAGTATCGGGCCGTATAATAAAAAATTAAGACGAAAGGAATTTGTTGAAAAACTTATTGGTAAATACAAAAAGTTAGGTATCTATATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGAGTCATGACTTGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAACCAAGGTCAACTACAATTTCTTCTCTGCGTGATGGCTAATAAAAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCCAAGTTGGTATAATCACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATCTTGCTCTCAAGATTAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAATAATAGGCTTCCTTACTTTGAGGGGGACGAACATGTTATGTTTATAGGTGCTGATGTCAATCACCCTGGTTTACGGGACAACAGGAGTCCATCAATTGTTGCTGTGGTTGCAACCATTAATTGGCCAGCTGCTAATCGCTATGCAGCACGTGTTTGCCCACAATTCAATCGAAGTGAGAAAATATTAAACTTTGGGGAGGTTTGTGTTGAGCTTGTTGGTTGTTATTGGAGGATGAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGCGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTAGATTTGAAGAGTGCATTCCAAAGATTAAATTATTTCCCAACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCGGATGGTTTGAAGGATGGGTCTTCCGGTGGCAATATTTTACCAGGAACAGTTATTGACACAAAAGTTATACACCCTTTTGAGTTTGATTTTTACCTCTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCTACTCACTACCATGTTTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTTACTTTTGCAAGGTGCACTAAACCCGTGTCTTTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTGTACCACGAAGCAAGGATTGGGATGCAGTCTAAGAAGTCAAGAGGATCTTCATCTTCTAAAGGTGCATTTGAACAAAGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTTATCTAA 3045 0.4118 MESGDGYSGRGTQQPNDEVILQPEWRRRTASTGGEQNLTLQPEWRRGRSTATALPSPSHAGDEAQKKDGEQKKEVILQPEWRRSRSTTTTATAYPWNQNQNYGVRKPFGSSSSSSGVQRSRNIDESWRNAPPLDYVVPKLESLQISKDLAASSFSLERKDKALPIRRPDRGGTLSILTSRLCVNHFLLKFNPESIIFHYNVSVKPNFSSKVGQPRKLSNNDLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETVNVVVFDGEDEKTTSYSVTITLLNKLRLHKLMDYLCGHSLSLPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKELRPGIIAVGGFQHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERINGFNLGEFQKFRKYVEEVLIGLKVSVTHRKSKQKYIIAGLTPTVTRHVTFPIDYTKSWKIEKDVNLLSFFNEKYDKDIVHKDIPCLDLGKGNRKNYVPMEFCVLAEGQRYPKERLDGASAKTLEAMALAHPSERQSAIQKMVQSSDGPCGGDIIQNFGMSVNMTMTTILGRVIGPPELKLGDPNGKIVKITVDLDKCHWNLAGRSMVEGKPVERWAILDFTSIGPYNKKLRRKEFVEKLIGKYKKLGIYMQEPIWYEESSMKILASHDLLSELLEKINNICKYNQGQLQFLLCVMANKSPGYKYLKWISETQVGIITQCCLSYSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFEGDEHVMFIGADVNHPGLRDNRSPSIVAVVATINWPAANRYAARVCPQFNRSEKILNFGEVCVELVGCYWRMNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKSAFQRLNYFPTITLIVAQKRHQTRFFPDGLKDGSSGGNILPGTVIDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSKKSRGSSSSKGAFEQRFYRLHADLENIMFFI* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3874 1014 Pfam PAZ domain 394 503 IPR003100 GO:0005515
Psa1g3874 1014 MobiDBLite consensus disorder prediction 61 80 - -
Psa1g3874 1014 Gene3D paz domain 372 497 - -
Psa1g3874 1014 SMART PAZ_2_a_3 377 515 IPR003100 GO:0005515
Psa1g3874 1014 ProSiteProfiles PAZ domain profile. 377 493 IPR003100 GO:0005515
Psa1g3874 1014 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 71 1013 - -
Psa1g3874 1014 MobiDBLite consensus disorder prediction 1 124 - -
Psa1g3874 1014 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 71 1013 - -
Psa1g3874 1014 MobiDBLite consensus disorder prediction 29 56 - -
Psa1g3874 1014 CDD Piwi_ago-like 540 974 IPR045246 -
Psa1g3874 1014 SMART DUF1785_2 323 376 IPR014811 -
Psa1g3874 1014 MobiDBLite consensus disorder prediction 1 19 - -
Psa1g3874 1014 CDD PAZ_argonaute_like 377 492 - -
Psa1g3874 1014 Gene3D - 559 740 - -
Psa1g3874 1014 Pfam N-terminal domain of argonaute 180 314 IPR032474 -
Psa1g3874 1014 Pfam Piwi domain 678 972 IPR003165 GO:0003676
Psa1g3874 1014 SUPERFAMILY PAZ domain 372 531 IPR036085 GO:0005515
Psa1g3874 1014 SUPERFAMILY Ribonuclease H-like 669 976 IPR012337 -
Psa1g3874 1014 Gene3D - 746 1014 IPR036397 GO:0003676
Psa1g3874 1014 MobiDBLite consensus disorder prediction 81 124 - -
Psa1g3874 1014 Pfam Argonaute linker 1 domain 324 375 IPR014811 -
Psa1g3874 1014 ProSiteProfiles Piwi domain profile. 677 976 IPR003165 GO:0003676
Psa1g3874 1014 SMART Piwi_a_2 677 975 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3874 Psa-Chr1 320769842 320775589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3874 167 1013 Eukaryotic Initiation Factors Gene Family AT1G48410 34.286 2.88e-144 456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3874 1 320769842 320775589 Psa1g3874 1 320769842 320775589 ECH